Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   AACH22_RS06445 Genome accession   NZ_OY970400
Coordinates   1355209..1357026 (+) Length   605 a.a.
NCBI ID   WP_048686548.1    Uniprot ID   A0AAN2TRX7
Organism   Peribacillus frigoritolerans isolate BFRIG     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1350209..1362026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACH22_RS06425 (BFRIG_01305) spxA 1350578..1350973 (+) 396 WP_034314502.1 transcriptional regulator SpxA -
  AACH22_RS06430 (BFRIG_01306) mecA 1351468..1352136 (+) 669 WP_034314498.1 adaptor protein MecA -
  AACH22_RS06435 (BFRIG_01307) cls 1352227..1353735 (+) 1509 WP_072272577.1 cardiolipin synthase -
  AACH22_RS06440 (BFRIG_01308) - 1353834..1355042 (+) 1209 WP_048686547.1 competence protein CoiA family protein -
  AACH22_RS06445 (BFRIG_01309) pepF 1355209..1357026 (+) 1818 WP_048686548.1 oligoendopeptidase F Regulator
  AACH22_RS06450 (BFRIG_01310) - 1357959..1358825 (-) 867 WP_048686607.1 ClpXP adapter SpxH family protein -
  AACH22_RS06455 (BFRIG_01311) - 1358849..1359253 (-) 405 WP_048686552.1 globin -
  AACH22_RS06460 (BFRIG_01312) - 1359487..1360146 (-) 660 WP_237766597.1 lytic transglycosylase domain-containing protein -
  AACH22_RS06465 (BFRIG_01313) - 1360178..1360756 (-) 579 WP_048686556.1 CYTH domain-containing protein -
  AACH22_RS06470 (BFRIG_01314) - 1361076..1361696 (+) 621 WP_034314484.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69852.35 Da        Isoelectric Point: 4.8018

>NTDB_id=1162222 AACH22_RS06445 WP_048686548.1 1355209..1357026(+) (pepF) [Peribacillus frigoritolerans isolate BFRIG]
MAQETKTNTLPSRSEIAPEDTWRLEDIFATEEDWEAAFKAVKEDLKKAEAHKGTLGESAEKLFAALQLQDEVFEKLGKVY
SYSHMRNDQDTTNPFYQGMEDRAKALYAQAAAAFSYMVPELLSIDESKVEGFLEEKEELKLYKHSLEEINLQRPHILSAE
QEELLAKASEVLDASGNTFGMLNNADLKFPTIKDEEGNEVEITHGRYIRFLESEDRRVREEAFKGVYSKYGEFRNTFAST
LSGEVKNHNFNATVRKYDSARQAALSNNNIPETVYDNLVKTVNDNLPLLHRYLDLRKKVLKLDELHMYDLFTPLVKEVKM
EVTYDEAKDYVLKGLAPLGEDYLNVLKEGFENRWVDVHENKGKRSGAYSSGTYGTNPYILMNWQNNVNNLFTLVHEFGHS
VHSYYTRKHQPYPYGNYSIFVAEVASTCNENLLNDYLLNSIEDEKKRIYLLNHYLEGFRGTLFRQTMFAEFEHTIHLKAQ
NGEALTADMLTKEYYELNKKYFGENVTIDEEIGLEWARIPHFYYNYYVYQYATGISAATALSKQILEEGEPAVKRYLEFL
KSGSSDYPIEVLKKAGVDMTKAEPVQEAMNVFEEKLNELEDLLNK

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=1162222 AACH22_RS06445 WP_048686548.1 1355209..1357026(+) (pepF) [Peribacillus frigoritolerans isolate BFRIG]
ATGGCACAGGAAACAAAAACGAATACATTACCTTCAAGAAGTGAAATAGCTCCTGAAGATACGTGGAGACTGGAAGATAT
CTTCGCAACCGAGGAAGATTGGGAAGCTGCCTTCAAAGCGGTAAAGGAAGACCTCAAGAAAGCGGAGGCACATAAAGGGA
CATTGGGAGAAAGCGCAGAAAAGTTATTTGCGGCCCTCCAACTTCAAGATGAGGTTTTCGAGAAGCTAGGGAAAGTTTAT
TCTTATTCACATATGCGCAATGATCAAGATACAACCAATCCATTTTATCAAGGGATGGAGGACCGGGCAAAAGCTTTATA
CGCACAGGCAGCGGCTGCGTTTTCATATATGGTTCCTGAACTATTGAGTATTGACGAAAGTAAAGTTGAAGGGTTTTTGG
AAGAAAAAGAGGAATTGAAATTATATAAACATTCTTTAGAGGAAATTAATCTTCAGAGACCCCATATCCTATCAGCAGAG
CAGGAAGAACTATTGGCGAAGGCATCAGAAGTACTCGATGCATCGGGCAATACTTTCGGTATGCTTAACAATGCCGATCT
GAAATTCCCGACCATCAAGGATGAAGAGGGAAATGAAGTGGAAATTACTCACGGAAGGTATATCAGATTTCTTGAGAGTG
AAGATCGCCGTGTACGTGAGGAGGCATTTAAAGGGGTATACAGCAAGTATGGGGAGTTCCGTAATACATTTGCTTCAACC
CTGTCAGGTGAGGTGAAAAACCACAATTTCAATGCCACGGTTCGAAAATATGATTCAGCACGCCAAGCGGCGTTAAGTAA
TAATAACATTCCGGAGACCGTTTACGATAATCTCGTTAAAACGGTCAACGACAACTTGCCATTACTGCACCGTTATCTTG
ATTTACGTAAAAAGGTACTGAAATTAGATGAACTTCATATGTATGATCTATTCACTCCTCTTGTTAAAGAAGTGAAGATG
GAAGTGACATATGACGAGGCCAAAGATTATGTCCTTAAAGGTCTTGCTCCGCTAGGGGAGGACTATTTGAACGTTTTGAA
AGAGGGGTTTGAAAACCGTTGGGTCGATGTGCATGAGAACAAAGGGAAACGAAGCGGTGCCTATTCTTCGGGTACATACG
GGACGAACCCTTATATTCTAATGAACTGGCAAAATAACGTCAATAACTTATTCACGCTCGTTCATGAGTTTGGGCATTCG
GTCCATAGCTACTATACACGTAAACATCAGCCATATCCATACGGGAATTATTCAATATTTGTAGCGGAAGTTGCATCGAC
TTGTAATGAAAACCTGTTGAATGATTATTTACTGAATTCGATCGAAGATGAAAAGAAACGCATCTATTTACTGAACCATT
ACCTGGAAGGTTTCCGTGGCACATTGTTCCGACAAACGATGTTTGCAGAGTTTGAACATACCATTCATTTAAAAGCTCAA
AACGGGGAAGCGTTGACGGCGGATATGCTTACTAAGGAATATTATGAGCTGAACAAGAAATACTTTGGCGAGAACGTGAC
CATTGATGAAGAAATCGGTTTGGAATGGGCTCGTATTCCACACTTCTACTATAATTACTATGTTTATCAATATGCAACTG
GAATCAGTGCAGCAACAGCATTGAGCAAGCAAATCCTTGAAGAAGGAGAGCCTGCTGTCAAAAGGTATCTGGAGTTCTTG
AAATCAGGAAGTTCCGATTATCCGATTGAAGTACTCAAAAAGGCTGGCGTCGATATGACAAAAGCCGAGCCTGTACAAGA
AGCCATGAATGTATTCGAAGAAAAATTAAATGAGTTGGAAGATCTTTTGAATAAATAG

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-590)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.673

98.182

0.498

Multiple sequence alignment