Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AACH22_RS00520 Genome accession   NZ_OY970400
Coordinates   106348..107736 (+) Length   462 a.a.
NCBI ID   WP_048677848.1    Uniprot ID   A0AAN2TQ28
Organism   Peribacillus frigoritolerans isolate BFRIG     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 101348..112736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACH22_RS00500 (BFRIG_00100) - 101471..101932 (+) 462 WP_048677843.1 CtsR family transcriptional regulator -
  AACH22_RS00505 (BFRIG_00101) - 101954..102505 (+) 552 WP_063595519.1 UvrB/UvrC motif-containing protein -
  AACH22_RS00510 (BFRIG_00102) - 102502..103578 (+) 1077 WP_260089005.1 protein arginine kinase -
  AACH22_RS00515 (BFRIG_00103) clpC 103708..106149 (+) 2442 WP_034305090.1 ATP-dependent protease ATP-binding subunit ClpC -
  AACH22_RS00520 (BFRIG_00104) radA 106348..107736 (+) 1389 WP_048677848.1 DNA repair protein RadA Machinery gene
  AACH22_RS00525 (BFRIG_00105) disA 107739..108812 (+) 1074 WP_063595517.1 DNA integrity scanning diadenylate cyclase DisA -
  AACH22_RS00530 (BFRIG_00106) - 109039..110136 (+) 1098 WP_048677852.1 PIN/TRAM domain-containing protein -
  AACH22_RS00535 (BFRIG_00107) ispD 110158..110847 (+) 690 WP_048677855.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  AACH22_RS00540 (BFRIG_00108) ispF 110862..111341 (+) 480 WP_048677857.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 50184.80 Da        Isoelectric Point: 8.2388

>NTDB_id=1162212 AACH22_RS00520 WP_048677848.1 106348..107736(+) (radA) [Peribacillus frigoritolerans isolate BFRIG]
MAVKKKTKFICQSCGYESAKWMGKCPGCGEWNKMVEETEIVKPARKGAFTHSEVRGSGEREKAAPITTIQSEKEPRIKTD
LMELNRALGGGIVQGSLVLIGGDPGIGKSTLLLQVSSQLAHKQKKVLYISGEESVKQTKLRADRLGTMSENLFVYSETDM
DYIQQAITDVKPDLVIIDSIQTVYHSEVTSAPGSVSQVRECTASLMRIAKTNGIAIFIVGHVTKEGAIAGPRLLEHMVDT
VLYFEGERHHTYRIIRAVKNRFGSTNEMGIFEMKEHGLEEVANPSEIFLEERSQGASGSTVVASMEGTRPVLVEIQALIS
PTSFGNPRRMATGIDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAVAISIASSFRDKPTNPADCIIGE
VGLTGEVRRVSRIEQRVQEAAKLGFERVIIPANNIGGWTAPKGIKIIGVSSVSEALKQSLGG

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=1162212 AACH22_RS00520 WP_048677848.1 106348..107736(+) (radA) [Peribacillus frigoritolerans isolate BFRIG]
ATGGCTGTAAAAAAGAAAACTAAATTTATCTGTCAGTCTTGTGGGTATGAGTCCGCGAAATGGATGGGGAAATGCCCAGG
CTGCGGTGAATGGAATAAAATGGTCGAGGAAACCGAAATCGTTAAACCTGCTAGAAAGGGCGCTTTTACCCATTCAGAGG
TGAGAGGTTCCGGGGAACGGGAGAAGGCAGCACCCATAACGACCATTCAATCAGAAAAAGAACCACGCATTAAGACGGAT
TTAATGGAATTGAATCGTGCTCTTGGGGGCGGGATCGTTCAGGGATCACTTGTATTGATCGGAGGGGACCCGGGTATCGG
TAAGTCCACCCTGCTTTTACAGGTATCATCCCAATTGGCGCATAAACAGAAAAAAGTGCTTTATATATCAGGTGAAGAAT
CAGTCAAGCAGACCAAATTGAGAGCGGACCGGCTTGGGACCATGTCGGAAAATCTATTCGTTTATTCTGAAACCGATATG
GACTATATCCAACAGGCAATTACAGATGTAAAACCGGATTTGGTCATTATTGACTCGATTCAAACGGTTTATCATTCGGA
GGTTACATCTGCCCCGGGAAGCGTTTCACAAGTGAGGGAATGCACAGCCTCACTCATGCGCATTGCTAAAACGAACGGAA
TCGCGATTTTTATCGTCGGTCACGTTACAAAAGAAGGGGCCATTGCGGGACCACGGCTGCTTGAGCACATGGTTGACACC
GTATTATATTTTGAAGGTGAAAGACACCATACATATCGAATTATACGTGCGGTTAAAAATCGCTTTGGTTCGACGAATGA
GATGGGTATTTTTGAAATGAAAGAACATGGATTGGAAGAGGTGGCGAATCCATCGGAAATTTTCCTTGAAGAACGGTCGC
AAGGAGCTTCGGGGTCCACAGTCGTCGCATCCATGGAGGGCACAAGGCCGGTGCTTGTTGAAATTCAAGCATTGATTTCT
CCTACGAGTTTTGGGAATCCTAGGCGGATGGCCACGGGAATTGACCACAATCGAGTTTCGCTTTTAATGGCTGTCCTGGA
AAAGAGAGTGGGCTTGCTGCTCCAAAACCAAGATGCGTATTTAAAGGTTGCTGGCGGTGTCAAGCTGGATGAACCGGCAA
TTGACCTCGCTGTTGCAATAAGCATTGCATCAAGCTTCCGTGATAAACCAACAAACCCTGCCGATTGCATCATTGGTGAA
GTGGGGCTGACTGGGGAAGTGAGAAGGGTGTCACGAATTGAACAAAGGGTGCAGGAAGCAGCGAAATTAGGGTTTGAGCG
GGTTATCATACCGGCTAATAATATAGGAGGGTGGACCGCGCCGAAAGGTATTAAGATCATTGGTGTTTCATCGGTTTCGG
AGGCTCTTAAACAATCGTTAGGGGGTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(369-434)

AAA domain (AAA_25)

(77-226)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

77.826

99.567

0.775
  radA Streptococcus mitis NCTC 12261

61.978

98.485

0.61
  radA Streptococcus pneumoniae Rx1

61.978

98.485

0.61
  radA Streptococcus pneumoniae D39

61.978

98.485

0.61
  radA Streptococcus pneumoniae R6

61.978

98.485

0.61
  radA Streptococcus pneumoniae TIGR4

61.978

98.485

0.61
  radA Streptococcus mitis SK321

61.758

98.485

0.608

Multiple sequence alignment