Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   U5A48_RS14535 Genome accession   NZ_OY856299
Coordinates   2973847..2974476 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain EC7072022BGR isolate EC7072022     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2968847..2979476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U5A48_RS14520 (ECOL707_15180) helD 2969089..2971143 (-) 2055 WP_000420536.1 DNA helicase IV -
  U5A48_RS14525 (ECOL707_15185) yccF 2971266..2971712 (+) 447 WP_001261235.1 YccF domain-containing protein -
  U5A48_RS14530 (ECOL707_15190) yccS 2971722..2973884 (+) 2163 WP_000875015.1 YccS family putative transporter -
  U5A48_RS14535 (ECOL707_15195) sxy/tfoX 2973847..2974476 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  U5A48_RS14540 (ECOL707_15200) sulA 2974695..2975204 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  U5A48_RS14545 (ECOL707_15205) ompA 2975561..2976601 (+) 1041 WP_258747768.1 porin OmpA -
  U5A48_RS14550 (ECOL707_15210) matP 2976677..2977129 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  U5A48_RS14555 (ECOL707_15215) ycbZ 2977315..2979075 (+) 1761 WP_000156526.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1162126 U5A48_RS14535 WP_000839153.1 2973847..2974476(-) (sxy/tfoX) [Escherichia coli strain EC7072022BGR isolate EC7072022]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1162126 U5A48_RS14535 WP_000839153.1 2973847..2974476(-) (sxy/tfoX) [Escherichia coli strain EC7072022BGR isolate EC7072022]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGTCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment