Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   U4992_RS16405 Genome accession   NZ_OY843610
Coordinates   3799492..3800448 (+) Length   318 a.a.
NCBI ID   WP_321826753.1    Uniprot ID   -
Organism   Maribacter dokdonensis isolate 44847     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3794492..3805448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U4992_RS16395 - 3795634..3797976 (+) 2343 WP_321826751.1 TonB-dependent receptor domain-containing protein -
  U4992_RS16400 - 3797987..3799354 (+) 1368 WP_321826752.1 DUF4374 domain-containing protein -
  U4992_RS16405 ceuB 3799492..3800448 (+) 957 WP_321826753.1 iron chelate uptake ABC transporter family permease subunit Machinery gene
  U4992_RS16410 - 3800445..3801395 (+) 951 WP_321826754.1 iron chelate uptake ABC transporter family permease subunit -
  U4992_RS16415 - 3801392..3802153 (+) 762 WP_348360675.1 ATP-binding cassette domain-containing protein -
  U4992_RS16420 - 3802157..3803104 (+) 948 WP_321826756.1 ABC transporter substrate-binding protein -
  U4992_RS16425 - 3803114..3803923 (+) 810 WP_321826757.1 siderophore-interacting protein -
  U4992_RS19250 - 3804101..3804403 (+) 303 WP_407659319.1 DUF6686 family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 34303.31 Da        Isoelectric Point: 7.9943

>NTDB_id=1162112 U4992_RS16405 WP_321826753.1 3799492..3800448(+) (ceuB) [Maribacter dokdonensis isolate 44847]
MVSLLGLLLVLAIVSLLVGVSDISFLDILSGESNDLKLLTLSRIPRTVALIITGIGISVCGLIMQQMTQNKFVSPTTAGT
LDAAELGILGSLIFLPQENIYLKVFFALGITFFASLIFIKIADSIRYRSVIFIPIVGLLFGGIINSITTFFAFQFNIVQD
VGAGQDSIGAWMMGDFSGILKGNYEPIFLCLPAVVITYWFANKFTVVGMGQDFAKNLGLNFRAVLNIGLFCVSLTVSSIV
VTVGTIPFLGLVIPNIVSLFLGDNLRKTLPYTAIVGACFLLLCDVISRLLIFPFEVPIGMTVGLIGGVLFLILLLRKK

Nucleotide


Download         Length: 957 bp        

>NTDB_id=1162112 U4992_RS16405 WP_321826753.1 3799492..3800448(+) (ceuB) [Maribacter dokdonensis isolate 44847]
TTGGTAAGTCTACTAGGCTTACTTTTAGTTTTGGCTATTGTGTCATTATTGGTTGGGGTTAGTGATATCTCTTTTTTAGA
TATTTTAAGTGGAGAAAGTAATGATCTTAAGCTGTTAACTTTAAGTAGAATTCCAAGAACTGTTGCTTTAATAATTACAG
GAATAGGTATTAGTGTCTGTGGTTTAATTATGCAACAGATGACCCAGAACAAATTTGTATCGCCTACAACGGCAGGTACG
TTAGATGCTGCTGAATTGGGTATTTTAGGTTCGCTTATTTTTTTACCACAAGAAAATATTTATTTAAAAGTTTTCTTTGC
CTTGGGCATAACATTTTTTGCTAGTTTAATTTTTATAAAAATTGCCGACAGCATTCGTTATAGAAGTGTCATTTTTATTC
CTATCGTAGGTTTGCTCTTTGGTGGAATTATAAATTCTATAACTACATTTTTTGCCTTTCAATTTAATATTGTACAAGAT
GTAGGTGCTGGTCAAGATTCAATTGGCGCTTGGATGATGGGTGATTTTTCTGGAATTTTAAAGGGTAATTACGAACCTAT
TTTTCTTTGTCTTCCGGCGGTAGTTATCACGTATTGGTTTGCAAATAAATTTACAGTGGTAGGTATGGGTCAAGACTTTG
CTAAAAACCTAGGACTTAATTTTAGAGCTGTACTTAATATTGGTCTTTTTTGTGTTTCCCTTACCGTAAGTTCAATTGTG
GTAACGGTTGGCACAATTCCATTTTTAGGTTTGGTTATTCCTAATATTGTAAGCTTATTTTTAGGTGATAATTTGAGAAA
AACCTTGCCTTATACAGCAATAGTAGGTGCTTGTTTTTTGTTGTTGTGCGATGTTATAAGTAGACTTCTGATATTTCCTT
TTGAAGTTCCAATAGGTATGACGGTAGGACTTATTGGAGGTGTTTTATTTCTAATATTGTTATTGCGTAAAAAATGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(7-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

49.524

99.057

0.491

Multiple sequence alignment