Detailed information NTG1161996

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: U9J37_RS13785
• Genome accession: NZ_OY808997
• Coordinates: 2961574..2962569 (+)
• Length: 331 a.a.
• NCBI ID: WP_005476465.1
• Uniprot ID: -
• Organism: Vibrio sp. 16 isolate VDT1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2956574..2967569

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
U9J37_RS13750 (VDT1_2801)	ftsB	2956638..2956916 (+)	279	WP_038214547.1	cell division protein FtsB	-
U9J37_RS13755 (VDT1_2802)	ispD	2956941..2957624 (+)	684	WP_005476460.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
U9J37_RS13760 (VDT1_2803)	ispF	2957628..2958104 (+)	477	WP_005476471.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
U9J37_RS13765 (VDT1_2804)	truD	2958161..2959204 (+)	1044	WP_038137918.1	tRNA pseudouridine(13) synthase TruD	-
U9J37_RS13770 (VDT1_2805)	surE	2959204..2959962 (+)	759	WP_005476467.1	5'/3'-nucleotidase SurE	-
U9J37_RS13775 (VDT1_2806)	-	2959965..2960591 (+)	627	WP_005476449.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
U9J37_RS13780 (VDT1_2807)	-	2960594..2961502 (+)	909	WP_322413839.1	peptidoglycan DD-metalloendopeptidase family protein	-
U9J37_RS13785 (VDT1_2808)	rpoS	2961574..2962569 (+)	996	WP_005476465.1	RNA polymerase sigma factor RpoS	Regulator
U9J37_RS13790 (VDT1_2809)	-	2962650..2963918 (-)	1269	WP_005476496.1	HlyC/CorC family transporter	-
U9J37_RS13795 (VDT1_2810)	-	2964041..2964835 (-)	795	WP_005476452.1	cytochrome C assembly family protein	-
U9J37_RS13800 (VDT1_2811)	ffh	2965044..2966432 (+)	1389	WP_005476509.1	signal recognition particle protein	-
U9J37_RS13805 (VDT1_2812)	rpsP	2966640..2966888 (+)	249	WP_005438039.1	30S ribosomal protein S16	-
U9J37_RS13810 (VDT1_2813)	rimM	2966916..2967464 (+)	549	WP_005476454.1	ribosome maturation factor RimM	-

Sequence

Protein

• Length: 331 a.a.
• Molecular weight: 37640.55 Da
• Isoelectric Point: 4.6929

>NTDB_id=1161996 U9J37_RS13785 WP_005476465.1 2961574..2962569(+) (rpoS) [Vibrio sp. 16 isolate VDT1]
MSISNAATKVEEFEVGQENVTAFESEQESPSTKSTPAEEVKGKEEFDASAKSLDATQLYLGEIGFSPLLTAEEEVLYARR
ALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQT
RTIRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIATQLDKPVDDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDVN
NSDPEVSTQDDDIKSSLVHWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILIKQGL
SMESLFSVTED

Nucleotide

• Length: 996 bp

>NTDB_id=1161996 U9J37_RS13785 WP_005476465.1 2961574..2962569(+) (rpoS) [Vibrio sp. 16 isolate VDT1]
ATGAGTATCAGCAATGCAGCAACGAAAGTCGAAGAATTCGAAGTAGGACAAGAAAACGTTACGGCGTTTGAATCTGAACA
AGAATCACCATCCACAAAATCTACACCTGCTGAAGAAGTTAAAGGAAAGGAAGAATTTGACGCTTCAGCAAAAAGTCTCG
ATGCCACACAGCTCTATTTGGGTGAAATTGGCTTTTCTCCACTATTAACCGCAGAAGAAGAAGTGCTGTACGCCCGCAGA
GCCTTAAGAGGTGATGAGGCAGCAAGAAAGCGCATGATAGAAAGTAACTTGCGTTTAGTAGTGAAAATTTCTCGTCGATA
CAGCAATCGAGGACTCGCACTTTTAGATCTTATTGAAGAAGGTAACCTAGGTCTTATTCGAGCTGTTGAAAAGTTCGATC
CTGAGCGTGGTTTCCGTTTTTCTACCTATGCCACTTGGTGGATTCGTCAGACCATTGAACGAGCCCTAATGAACCAGACT
CGCACGATTCGTTTGCCAATCCATGTTGTGAAAGAGCTGAACATCTATCTACGCACTGCACGCGAACTTTCTCAAAAGCT
AGATCATGAACCGACTGCTGAAGAGATTGCGACCCAACTAGATAAGCCGGTAGATGATGTCAGCAAAATGCTTCGTCTCA
ATGAGCGAATCAGTTCGGTTGATACACCAATTGGTGGGGATGGCGAAAAAGCGTTGTTGGATATCATTCCAGACGTTAAT
AACTCAGACCCTGAAGTATCGACGCAAGATGACGATATTAAAAGCTCGCTTGTGCATTGGTTAGATGAACTTAACCCGAA
ACAAAAAGAAGTCTTAGCTCGTCGCTTTGGTCTGCTGGGTTATGAGCCATCGACACTTGAAGAAGTAGGACGTGAAATCA
ATTTAACTCGAGAGCGAGTACGCCAAATTCAAGTAGAAGGTCTACGCCGTTTAAGAGAGATTTTGATTAAACAAGGCTTG
AGTATGGAAAGTTTGTTTAGCGTTACCGAAGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 2 (Sigma70_r2) (92-161)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (54-87)

• Sigma-70 region 3 (Sigma70_r3) (172-245)

• Sigma-70, region 4 (Sigma70_r4) (260-313)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.846