Detailed information
Bioinformatically predicted
Overview
| Name | comF | Type | Machinery gene |
| Locus tag | U9J37_RS11930 | Genome accession | NZ_OY808997 |
| Coordinates | 2601905..2602450 (+) | Length | 181 a.a. |
| NCBI ID | WP_322413819.1 | Uniprot ID | - |
| Organism | Vibrio sp. 16 isolate VDT1 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2596905..2607450
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| U9J37_RS11910 (VDT1_2427) | greB | 2597336..2597818 (+) | 483 | WP_005472596.1 | transcription elongation factor GreB | - |
| U9J37_RS11915 (VDT1_2428) | - | 2597874..2600204 (+) | 2331 | WP_005472563.1 | Tex family protein | - |
| U9J37_RS11920 (VDT1_2429) | - | 2600288..2600758 (-) | 471 | WP_005472607.1 | hypothetical protein | - |
| U9J37_RS11925 (VDT1_2430) | bioH | 2600876..2601673 (-) | 798 | WP_005472609.1 | pimeloyl-ACP methyl ester esterase BioH | - |
| U9J37_RS11930 (VDT1_2431) | comF | 2601905..2602450 (+) | 546 | WP_322413819.1 | ComF family protein | Machinery gene |
| U9J37_RS11935 (VDT1_2432) | nfuA | 2602540..2603127 (+) | 588 | WP_005472515.1 | Fe-S biogenesis protein NfuA | - |
| U9J37_RS11940 (VDT1_2433) | nudE | 2603267..2603815 (+) | 549 | WP_005472520.1 | ADP compounds hydrolase NudE | - |
| U9J37_RS11945 (VDT1_2434) | cysQ | 2603842..2604669 (+) | 828 | WP_005472614.1 | 3'(2'),5'-bisphosphate nucleotidase CysQ | - |
| U9J37_RS11950 (VDT1_2435) | recG | 2604750..2606828 (-) | 2079 | WP_005472524.1 | ATP-dependent DNA helicase RecG | - |
Sequence
Protein
Download Length: 181 a.a. Molecular weight: 20481.78 Da Isoelectric Point: 9.4050
>NTDB_id=1161990 U9J37_RS11930 WP_322413819.1 2601905..2602450(+) (comF) [Vibrio sp. 16 isolate VDT1]
MSDVLECGRCLTSPPLWSKLYCVGDYQAPLSRYVHQLKYERQFWVAEKLAELFVPTVSDPAPLITSVPLHWRRHAYRGFN
QSELLAMAIARQLKVMYSPLFKRVRATSPQQGKNRQQRMANLHQVFTLKGGVAAKRIAIVDDVLTTGSTVHHLCKLLLDA
GVESVDIYTICRTPEPADKSD
MSDVLECGRCLTSPPLWSKLYCVGDYQAPLSRYVHQLKYERQFWVAEKLAELFVPTVSDPAPLITSVPLHWRRHAYRGFN
QSELLAMAIARQLKVMYSPLFKRVRATSPQQGKNRQQRMANLHQVFTLKGGVAAKRIAIVDDVLTTGSTVHHLCKLLLDA
GVESVDIYTICRTPEPADKSD
Nucleotide
Download Length: 546 bp
>NTDB_id=1161990 U9J37_RS11930 WP_322413819.1 2601905..2602450(+) (comF) [Vibrio sp. 16 isolate VDT1]
GTGTCTGACGTTCTTGAGTGTGGTCGCTGTTTAACATCACCGCCACTTTGGTCAAAACTGTACTGCGTGGGTGACTATCA
AGCGCCCTTGTCTCGCTATGTTCATCAACTAAAATACGAACGTCAGTTTTGGGTGGCGGAAAAACTAGCAGAGCTGTTCG
TTCCAACAGTGAGTGACCCTGCACCTCTTATTACGTCGGTGCCCTTGCATTGGCGGCGTCACGCTTATCGTGGTTTCAAT
CAAAGTGAGTTATTGGCGATGGCCATTGCTCGTCAACTGAAGGTGATGTATTCCCCTCTCTTTAAGCGAGTCCGCGCGAC
ATCCCCTCAGCAGGGGAAAAATCGTCAGCAGCGTATGGCGAACTTGCATCAAGTTTTTACACTCAAAGGTGGGGTTGCAG
CAAAACGTATTGCGATTGTTGATGATGTTCTCACCACAGGCAGTACGGTGCATCATTTATGCAAATTACTGCTTGATGCG
GGCGTCGAAAGCGTTGATATTTACACGATATGCCGTACTCCTGAACCTGCAGATAAGAGCGACTAG
GTGTCTGACGTTCTTGAGTGTGGTCGCTGTTTAACATCACCGCCACTTTGGTCAAAACTGTACTGCGTGGGTGACTATCA
AGCGCCCTTGTCTCGCTATGTTCATCAACTAAAATACGAACGTCAGTTTTGGGTGGCGGAAAAACTAGCAGAGCTGTTCG
TTCCAACAGTGAGTGACCCTGCACCTCTTATTACGTCGGTGCCCTTGCATTGGCGGCGTCACGCTTATCGTGGTTTCAAT
CAAAGTGAGTTATTGGCGATGGCCATTGCTCGTCAACTGAAGGTGATGTATTCCCCTCTCTTTAAGCGAGTCCGCGCGAC
ATCCCCTCAGCAGGGGAAAAATCGTCAGCAGCGTATGGCGAACTTGCATCAAGTTTTTACACTCAAAGGTGGGGTTGCAG
CAAAACGTATTGCGATTGTTGATGATGTTCTCACCACAGGCAGTACGGTGCATCATTTATGCAAATTACTGCTTGATGCG
GGCGTCGAAAGCGTTGATATTTACACGATATGCCGTACTCCTGAACCTGCAGATAAGAGCGACTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comF | Vibrio cholerae strain A1552 |
57.778 |
99.448 |
0.575 |
| comF | Vibrio campbellii strain DS40M4 |
50.867 |
95.58 |
0.486 |
| comF | Haemophilus influenzae 86-028NP |
36.667 |
99.448 |
0.365 |