Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   U9J37_RS10345 Genome accession   NZ_OY808997
Coordinates   2267821..2268828 (-) Length   335 a.a.
NCBI ID   WP_038141259.1    Uniprot ID   -
Organism   Vibrio sp. 16 isolate VDT1     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2262821..2273828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U9J37_RS10320 (VDT1_2104) frdD 2263025..2263402 (+) 378 WP_005474194.1 fumarate reductase subunit FrdD -
  U9J37_RS10325 (VDT1_2105) - 2263488..2264891 (-) 1404 WP_005474160.1 SPFH domain-containing protein -
  U9J37_RS10330 (VDT1_2106) hslU 2265117..2266451 (-) 1335 WP_005474183.1 HslU--HslV peptidase ATPase subunit -
  U9J37_RS10335 (VDT1_2107) hslV 2266489..2267034 (-) 546 WP_005474218.1 ATP-dependent protease subunit HslV -
  U9J37_RS10340 (VDT1_2108) ftsN 2267163..2267708 (-) 546 WP_038186689.1 cell division protein FtsN -
  U9J37_RS10345 (VDT1_2109) cytR 2267821..2268828 (-) 1008 WP_038141259.1 DNA-binding transcriptional regulator CytR Regulator
  U9J37_RS10350 (VDT1_2110) priA 2269182..2271383 (-) 2202 WP_005474165.1 primosomal protein N' -
  U9J37_RS10355 (VDT1_2111) rpmE 2271692..2271910 (+) 219 WP_004743259.1 50S ribosomal protein L31 -
  U9J37_RS10360 (VDT1_2112) - 2272167..2273444 (+) 1278 WP_005474185.1 malic enzyme-like NAD(P)-binding protein -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36867.44 Da        Isoelectric Point: 6.4935

>NTDB_id=1161984 U9J37_RS10345 WP_038141259.1 2267821..2268828(-) (cytR) [Vibrio sp. 16 isolate VDT1]
MATMKDVAQLAGVSTATVSRALMNPEKVSSATRKRVEDAVLEAGYSPNSLARNLRRNESKTIIAIIPDICDPYYTEIIRG
IEDAAMEHGYIVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQMGHKRVAQISGPESAVLCQFRHQGYQQALRRAGITMNANYCTNGDFTFEAGAKAVRQLLALKEPPTA
VFCHNDAMAIGAIQEAKKLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TNLVVRESAAPPRVL

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=1161984 U9J37_RS10345 WP_038141259.1 2267821..2268828(-) (cytR) [Vibrio sp. 16 isolate VDT1]
ATGGCGACAATGAAGGATGTTGCCCAGCTAGCAGGCGTTTCGACAGCGACGGTTTCTCGTGCGTTGATGAATCCCGAAAA
AGTGTCTTCTGCTACCAGGAAACGAGTAGAAGATGCAGTGCTAGAAGCTGGATACTCACCGAACTCTTTAGCGCGTAATT
TGCGTCGCAATGAGTCCAAAACCATCATTGCTATCATTCCAGACATCTGTGACCCCTATTACACAGAAATCATCCGTGGA
ATCGAAGACGCAGCAATGGAACATGGCTACATCGTTTTACTCGGCGACAGCGGCCAACAGAAAAAACGTGAAAGCTCATT
TGTGAATCTCGTCTTTACCAAGCAGGCAGATGGCATGTTGCTACTTGGTACCGACCTTCCTTTTGATGTCAGTAAGCCAG
AGCAAAAAAACCTGCCTCCGATGGTGATGGCATGTGAATTTGCACCTGAGCTAGAGCTTCCTACAGTTCATATCGACAAC
TTAACATCGGCGTTTGAGGCAGTGAACTATTTGACGCAAATGGGGCACAAACGTGTCGCACAAATTTCGGGTCCAGAATC
CGCGGTTTTGTGTCAGTTCCGCCATCAAGGTTATCAACAAGCGCTGCGCCGTGCGGGCATCACCATGAACGCCAACTACT
GCACTAATGGAGACTTTACCTTTGAAGCGGGTGCGAAGGCGGTTCGCCAACTACTTGCGCTCAAAGAGCCGCCTACCGCG
GTATTCTGTCACAATGATGCGATGGCCATTGGCGCGATCCAAGAAGCGAAGAAGTTAGGGCTACGGGTCCCACAAGATTT
GTCTGTCGTTGGCTTCGATGACATTCAGTTCGCCCAGTATTGCGATCCGCCGCTAACCACGATTTCTCAGCCAAGGTATG
AGATTGGGCGCCAAGCCATGTTGATGATGCTTGAGCTGCTTCGAGGGCATGATGTACGTGCTGGTTCAAGGCTGCTCGAG
ACGAATCTTGTTGTGAGAGAGAGCGCGGCGCCACCAAGAGTACTGTAA

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

93.072

99.104

0.922
  cytR Vibrio parahaemolyticus RIMD 2210633

88.288

99.403

0.878

Multiple sequence alignment