Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   U9J37_RS09195 Genome accession   NZ_OY808997
Coordinates   2035760..2036278 (-) Length   172 a.a.
NCBI ID   WP_005475528.1    Uniprot ID   A0A0A5HNM1
Organism   Vibrio sp. 16 isolate VDT1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2030760..2041278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U9J37_RS09160 (VDT1_1866) - 2031388..2031696 (-) 309 WP_005475534.1 PTS lactose/cellobiose transporter subunit IIA -
  U9J37_RS09165 (VDT1_1867) - 2031747..2033078 (-) 1332 WP_043887327.1 PTS sugar transporter subunit IIC -
  U9J37_RS09170 (VDT1_1868) - 2033165..2033467 (-) 303 WP_038140319.1 PTS sugar transporter subunit IIB -
  U9J37_RS09175 (VDT1_1869) - 2033812..2034507 (-) 696 WP_038140320.1 VC0807 family protein -
  U9J37_RS09180 - 2034608..2034904 (+) 297 WP_043887325.1 hypothetical protein -
  U9J37_RS09190 (VDT1_1871) - 2035222..2035698 (+) 477 WP_005475517.1 RDD family protein -
  U9J37_RS09195 (VDT1_1872) luxS 2035760..2036278 (-) 519 WP_005475528.1 S-ribosylhomocysteine lyase Regulator
  U9J37_RS09200 (VDT1_1873) - 2036303..2036902 (-) 600 WP_005475479.1 hypothetical protein -
  U9J37_RS09205 (VDT1_1874) gshA 2036912..2038480 (-) 1569 WP_005475519.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19033.77 Da        Isoelectric Point: 4.6975

>NTDB_id=1161974 U9J37_RS09195 WP_005475528.1 2035760..2036278(-) (luxS) [Vibrio sp. 16 isolate VDT1]
MPLLDSFTVDHTRMNAPAVRVAKTMTTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNSDSVEIIDISP
MGCRTGFYMSLIGTPQEQQVAEAWLSAMQDVLKVESQNKIPELNEYQCGTAAMHSLDEAKQIAQAIIDAGISVNKNDDLA
LPEAMLKELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1161974 U9J37_RS09195 WP_005475528.1 2035760..2036278(-) (luxS) [Vibrio sp. 16 isolate VDT1]
ATGCCGTTATTAGATAGCTTTACCGTCGATCACACTCGTATGAACGCACCTGCCGTTCGAGTGGCGAAAACCATGACCAC
CCCCAAGGGCGATACGATTACCGTGTTCGATTTGCGATTTACTGCGCCAAACAAAGATATCCTGTCAGAGAAAGGGATTC
ATACGCTAGAGCACCTATATGCAGGGTTCATGCGTAACCATCTGAATAGCGATAGCGTGGAAATCATCGATATTTCACCT
ATGGGATGTCGTACCGGTTTCTACATGAGCTTGATTGGTACTCCTCAAGAGCAGCAGGTGGCTGAGGCGTGGTTGTCCGC
AATGCAAGACGTACTGAAAGTAGAGAGCCAAAATAAAATTCCAGAGCTCAACGAGTATCAGTGCGGAACTGCTGCAATGC
ACTCATTAGATGAAGCGAAGCAGATTGCTCAGGCCATTATTGATGCGGGCATCTCCGTCAACAAGAACGATGACCTAGCG
CTACCTGAGGCGATGCTCAAAGAGTTAAAAGTCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A5HNM1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

87.135

99.419

0.866

Multiple sequence alignment