Detailed information
Bioinformatically predicted
Overview
| Name | dprB | Type | Machinery gene |
| Locus tag | ACKU3H_RS01335 | Genome accession | NZ_OY780939 |
| Coordinates | 278721..279098 (+) | Length | 125 a.a. |
| NCBI ID | WP_320035179.1 | Uniprot ID | - |
| Organism | MAG: Halarcobacter sp. isolate c23ce619-377f-483f-a597-00588adfbfa9 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 273721..284098
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACKU3H_RS01310 (SNR01_RS01305) | gatC | 274899..275189 (+) | 291 | WP_320035174.1 | Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC | - |
| ACKU3H_RS01315 (SNR01_RS01310) | - | 275198..275542 (+) | 345 | WP_320035175.1 | arsenate reductase family protein | - |
| ACKU3H_RS01320 (SNR01_RS01315) | - | 275573..276925 (-) | 1353 | WP_320035176.1 | class II 3-deoxy-7-phosphoheptulonate synthase | - |
| ACKU3H_RS01325 (SNR01_RS01320) | - | 277027..278022 (-) | 996 | WP_320035177.1 | transaldolase | - |
| ACKU3H_RS01330 (SNR01_RS01325) | serB | 278033..278653 (-) | 621 | WP_320035178.1 | phosphoserine phosphatase SerB | - |
| ACKU3H_RS01335 (SNR01_RS01330) | dprB | 278721..279098 (+) | 378 | WP_320035179.1 | Holliday junction resolvase RuvX | Machinery gene |
| ACKU3H_RS01340 (SNR01_RS01335) | acpS | 279100..279450 (-) | 351 | WP_320035180.1 | holo-ACP synthase | - |
| ACKU3H_RS01345 (SNR01_RS01340) | - | 279481..280440 (+) | 960 | WP_320035181.1 | ABC transporter permease | - |
| ACKU3H_RS01350 (SNR01_RS01345) | panC | 280477..281295 (+) | 819 | WP_320035182.1 | pantoate--beta-alanine ligase | - |
| ACKU3H_RS01355 (SNR01_RS01350) | rimO | 281359..282708 (+) | 1350 | WP_320035183.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| ACKU3H_RS01360 (SNR01_RS01355) | tilS | 282710..283693 (+) | 984 | WP_320035184.1 | tRNA lysidine(34) synthetase TilS | - |
| ACKU3H_RS01365 (SNR01_RS01360) | - | 283682..283951 (-) | 270 | WP_320035185.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 125 a.a. Molecular weight: 14310.69 Da Isoelectric Point: 7.2048
>NTDB_id=1161787 ACKU3H_RS01335 WP_320035179.1 278721..279098(+) (dprB) [MAG: Halarcobacter sp. isolate c23ce619-377f-483f-a597-00588adfbfa9]
MKLASIDIGLKRIGMAISLHNDIVTPLPAVLRKNRNQASSDVLKVLKEWEIEKLIVGFPSASEDMQKRVEHFTKLLELNI
PYEFQEENMSSIEAEELIKGDIKYKRDGRVDSLAAKIILERYLSK
MKLASIDIGLKRIGMAISLHNDIVTPLPAVLRKNRNQASSDVLKVLKEWEIEKLIVGFPSASEDMQKRVEHFTKLLELNI
PYEFQEENMSSIEAEELIKGDIKYKRDGRVDSLAAKIILERYLSK
Nucleotide
Download Length: 378 bp
>NTDB_id=1161787 ACKU3H_RS01335 WP_320035179.1 278721..279098(+) (dprB) [MAG: Halarcobacter sp. isolate c23ce619-377f-483f-a597-00588adfbfa9]
TTGAAACTTGCATCAATTGATATTGGACTAAAAAGAATAGGTATGGCAATATCCCTACATAATGATATAGTAACCCCTCT
TCCAGCAGTTTTAAGAAAAAATAGAAATCAAGCTTCAAGTGATGTTTTAAAAGTTTTAAAAGAGTGGGAAATTGAAAAAC
TTATTGTTGGATTTCCAAGTGCCAGTGAAGATATGCAAAAAAGAGTCGAACATTTTACAAAACTTTTAGAACTAAATATC
CCTTATGAATTTCAAGAAGAAAATATGAGCTCTATTGAAGCAGAAGAACTTATAAAAGGTGATATAAAATATAAAAGAGA
TGGAAGAGTTGATTCCCTTGCAGCTAAAATTATACTTGAAAGATATTTAAGTAAATAA
TTGAAACTTGCATCAATTGATATTGGACTAAAAAGAATAGGTATGGCAATATCCCTACATAATGATATAGTAACCCCTCT
TCCAGCAGTTTTAAGAAAAAATAGAAATCAAGCTTCAAGTGATGTTTTAAAAGTTTTAAAAGAGTGGGAAATTGAAAAAC
TTATTGTTGGATTTCCAAGTGCCAGTGAAGATATGCAAAAAAGAGTCGAACATTTTACAAAACTTTTAGAACTAAATATC
CCTTATGAATTTCAAGAAGAAAATATGAGCTCTATTGAAGCAGAAGAACTTATAAAAGGTGATATAAAATATAAAAGAGA
TGGAAGAGTTGATTCCCTTGCAGCTAAAATTATACTTGAAAGATATTTAAGTAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| dprB | Helicobacter pylori 26695 |
48.819 |
100 |
0.496 |