Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   U8955_RS02520 Genome accession   NZ_OY769914
Coordinates   487586..487879 (+) Length   97 a.a.
NCBI ID   WP_050562294.1    Uniprot ID   -
Organism   Streptococcus oralis subsp. dentisani isolate Streptococcus dentisani 7746     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 482586..492879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U8955_RS02495 (SDENT7746_02490) - 483434..484585 (+) 1152 WP_000042199.1 restriction endonuclease subunit S -
  U8955_RS02500 (SDENT7746_02495) - 484639..486240 (+) 1602 WP_000450450.1 type I restriction-modification system subunit M -
  U8955_RS02505 (SDENT7746_02500) - 486321..486725 (+) 405 WP_000438473.1 YbgA family protein -
  U8955_RS02510 (SDENT7746_02505) - 486709..487074 (+) 366 WP_001241808.1 TIGR02328 family protein -
  U8955_RS02515 (SDENT7746_02510) - 487231..487596 (+) 366 WP_038804830.1 type II toxin-antitoxin system RelE/ParE family toxin -
  U8955_RS02520 (SDENT7746_02515) HI0659 487586..487879 (+) 294 WP_050562294.1 helix-turn-helix domain-containing protein Machinery gene
  U8955_RS02525 (SDENT7746_02520) metE 488232..490481 (+) 2250 WP_000108239.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  U8955_RS02530 (SDENT7746_02525) metF 490576..491442 (+) 867 WP_038804832.1 methylenetetrahydrofolate reductase [NAD(P)H] -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10793.46 Da        Isoelectric Point: 5.1991

>NTDB_id=1161711 U8955_RS02520 WP_050562294.1 487586..487879(+) (HI0659) [Streptococcus oralis subsp. dentisani isolate Streptococcus dentisani 7746]
MKNSAIGSNWKDIRTELFTKEEILESDMRVAIMSELIEARHEQGISQKKLEELSGVSQPVIARMETGKTSPQLDTVLKVL
ASLGKTLAVVPLEQEKN

Nucleotide


Download         Length: 294 bp        

>NTDB_id=1161711 U8955_RS02520 WP_050562294.1 487586..487879(+) (HI0659) [Streptococcus oralis subsp. dentisani isolate Streptococcus dentisani 7746]
ATGAAGAATAGTGCCATTGGAAGTAATTGGAAGGATATCCGAACAGAACTCTTTACCAAGGAAGAAATTCTTGAAAGTGA
TATGCGAGTGGCTATTATGAGTGAGTTGATTGAGGCTAGACATGAGCAAGGTATCAGTCAGAAAAAGCTAGAGGAACTCA
GTGGAGTAAGCCAGCCTGTCATAGCTAGGATGGAAACAGGAAAGACTAGTCCTCAGTTGGATACAGTCTTGAAAGTTCTA
GCCAGTTTAGGAAAGACACTAGCAGTCGTCCCACTAGAACAGGAAAAAAATTGA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(37-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

59.341

93.814

0.557

Multiple sequence alignment