Detailed information NTG1161678

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: ACORJT_RS04670
• Genome accession: NZ_OY764955
• Coordinates: 1004125..1005279 (-)
• Length: 384 a.a.
• NCBI ID: WP_185977732.1
• Uniprot ID: -
• Organism: MAG: Thiomicrorhabdus sp. isolate 8ea2596c-92a0-4817-a9d0-5c5ca94cf059
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 999125..1010279

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACORJT_RS04640 (SLU16_RS04640)	-	999676..1000443 (+)	768	WP_319558411.1	type III pantothenate kinase	-
ACORJT_RS04650 (SLU16_RS04650)	fabA	1000699..1001214 (+)	516	WP_185977729.1	3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA	-
ACORJT_RS04655 (SLU16_RS04655)	fabB	1001218..1002438 (+)	1221	WP_319558412.1	beta-ketoacyl-ACP synthase I	-
ACORJT_RS04660 (SLU16_RS04660)	-	1002547..1003143 (-)	597	WP_228766941.1	transglycosylase SLT domain-containing protein	-
ACORJT_RS04665 (SLU16_RS04665)	-	1003148..1004116 (-)	969	WP_319558413.1	DUF2914 domain-containing protein	-
ACORJT_RS04670 (SLU16_RS04670)	pilA	1004125..1005279 (-)	1155	WP_185977732.1	signal recognition particle-docking protein FtsY	Machinery gene
ACORJT_RS04675 (SLU16_RS04675)	-	1005447..1006844 (+)	1398	WP_319558414.1	pitrilysin family protein	-
ACORJT_RS04680 (SLU16_RS04680)	-	1006844..1008154 (+)	1311	WP_319558415.1	pitrilysin family protein	-
ACORJT_RS04685 (SLU16_RS04685)	-	1008225..1009946 (-)	1722	WP_319558416.1	lysophospholipid acyltransferase family protein	-

Sequence

Protein

• Length: 384 a.a.
• Molecular weight: 42042.69 Da
• Isoelectric Point: 4.4474

>NTDB_id=1161678 ACORJT_RS04670 WP_185977732.1 1004125..1005279(-) (pilA) [MAG: Thiomicrorhabdus sp. isolate 8ea2596c-92a0-4817-a9d0-5c5ca94cf059]
MLSFLRRKKNTPEDQPQETAVEETLAETVEEVESQPSPAQETPAENFEQPYEQPVEQSVELPAETVDAEPEKKGFFARLK
QGLSKTRRSFTDSLATLVLGRKEIDDDLLEELEMILLSADVGVEATDKIIRNLTDQVSRKELKDPDALIVSLKQQLQALI
DPMARPLQIDEFLQSNGGPYVILMVGINGVGKTTTIGKLAKKFQLEGKSVMLAAGDTFRAAAVEQLQTWGERNNVPVIAQ
KTGADSAAVIFDAVQSAKARNIDVLIADTAGRLHTQSNLMEELKKVKRVIGKVDDTAPHEVMLVIDAGTGQNALNQTKQF
HEAVAVSGITLTKLDGTAKGGIIFALAEQCQIPIRYIGVGESIDDLKPFDSKQFTEALFENDSE

Nucleotide

• Length: 1155 bp

>NTDB_id=1161678 ACORJT_RS04670 WP_185977732.1 1004125..1005279(-) (pilA) [MAG: Thiomicrorhabdus sp. isolate 8ea2596c-92a0-4817-a9d0-5c5ca94cf059]
ATGTTAAGTTTTTTGCGCCGCAAAAAAAACACGCCCGAAGATCAGCCTCAGGAAACGGCTGTAGAAGAAACACTGGCTGA
AACCGTCGAAGAGGTAGAATCCCAACCATCTCCTGCACAGGAAACACCAGCTGAAAACTTTGAACAACCGTATGAACAGC
CGGTTGAGCAATCCGTTGAATTACCCGCCGAGACAGTGGATGCCGAACCGGAAAAGAAAGGATTTTTTGCCCGTTTAAAA
CAGGGGTTGAGTAAAACCCGCCGCAGCTTTACCGACAGCTTGGCAACCCTGGTGCTGGGCCGCAAAGAGATTGACGACGA
CCTGCTTGAAGAACTGGAAATGATCCTGTTAAGCGCCGACGTCGGCGTAGAGGCGACCGATAAGATCATCCGCAATCTGA
CCGACCAGGTCTCGCGTAAGGAATTAAAAGATCCTGACGCACTGATCGTCTCGCTCAAACAACAACTGCAGGCATTGATC
GACCCGATGGCTCGCCCTTTGCAAATCGATGAATTCCTGCAAAGCAACGGCGGACCTTATGTCATCCTAATGGTCGGCAT
CAACGGCGTCGGCAAAACCACGACCATCGGCAAGCTGGCTAAGAAATTCCAGCTGGAAGGTAAATCGGTCATGCTGGCTG
CCGGCGATACCTTCCGCGCCGCAGCGGTTGAGCAGTTGCAAACTTGGGGCGAACGTAACAATGTTCCGGTAATCGCTCAA
AAAACCGGTGCTGATTCCGCAGCGGTTATTTTCGATGCGGTACAGTCTGCCAAAGCCAGAAACATCGATGTTCTAATCGC
CGATACCGCAGGACGCCTGCATACTCAGTCCAACTTAATGGAAGAACTGAAAAAGGTGAAGCGCGTGATCGGCAAGGTTG
ACGATACGGCCCCGCATGAAGTGATGCTGGTTATCGATGCCGGTACCGGGCAGAATGCTCTGAACCAAACCAAACAATTC
CATGAAGCGGTCGCTGTTTCCGGTATCACCCTGACTAAACTGGATGGAACCGCAAAAGGCGGGATCATTTTTGCGCTGGC
GGAACAGTGTCAGATTCCGATCCGCTATATCGGCGTCGGAGAATCGATCGACGACTTGAAACCGTTTGACAGCAAACAGT
TTACTGAGGCATTATTCGAAAACGATTCCGAATAG

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (180-379)

• SRP54-type protein, helical bundle domain (SRP54_N) (91-156)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	50.118	100	0.552