Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   RG38_RS11435 Genome accession   NZ_CP010145
Coordinates   2173566..2174081 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain D5     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2168566..2179081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG38_RS11410 (RG38_10770) ygaZ 2168965..2169702 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  RG38_RS11415 (RG38_10775) ygaH 2169692..2170027 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  RG38_RS11420 (RG38_10780) emrR 2170118..2170648 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  RG38_RS11425 (RG38_10785) emrA 2170775..2171947 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  RG38_RS11430 (RG38_10790) emrB 2171964..2173502 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  RG38_RS11435 (RG38_10795) luxS 2173566..2174081 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  RG38_RS11440 (RG38_10800) gshA 2174231..2175787 (-) 1557 WP_000611802.1 glutamate--cysteine ligase -
  RG38_RS11445 (RG38_10805) yqaA 2175860..2176288 (-) 429 WP_001287457.1 YqaA family protein -
  RG38_RS11450 (RG38_10810) yqaB 2176285..2176851 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  RG38_RS11465 (RG38_10825) csrA 2177618..2177803 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=116165 RG38_RS11435 WP_001130211.1 2173566..2174081(-) (luxS) [Escherichia coli strain D5]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=116165 RG38_RS11435 WP_001130211.1 2173566..2174081(-) (luxS) [Escherichia coli strain D5]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment