Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ACKPBX_RS12295 Genome accession   NZ_OY762653
Coordinates   2596895..2598712 (+) Length   605 a.a.
NCBI ID   WP_086628373.1    Uniprot ID   A0A5C5E909
Organism   MAG: Trichococcus shcherbakoviae isolate 3f5bddbc-f9f7-4dd9-9883-cce70881a83c     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2591895..2603712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKPBX_RS12275 (SNQ41_RS12250) trpS 2592601..2593593 (-) 993 WP_319995537.1 tryptophan--tRNA ligase -
  ACKPBX_RS12280 (SNQ41_RS12255) spxA 2593983..2594381 (+) 399 WP_086628375.1 transcriptional regulator SpxA -
  ACKPBX_RS12285 (SNQ41_RS12260) - 2594600..2595262 (+) 663 WP_233436801.1 adaptor protein MecA -
  ACKPBX_RS12290 (SNQ41_RS12265) - 2595646..2596812 (+) 1167 WP_319995538.1 competence protein CoiA family protein -
  ACKPBX_RS12295 (SNQ41_RS12270) pepF 2596895..2598712 (+) 1818 WP_086628373.1 oligoendopeptidase F Regulator
  ACKPBX_RS12300 (SNQ41_RS12275) - 2598801..2599499 (-) 699 WP_119093178.1 DsbA family protein -
  ACKPBX_RS12305 (SNQ41_RS12280) - 2599859..2600452 (-) 594 WP_319995539.1 CYTH domain-containing protein -
  ACKPBX_RS12310 (SNQ41_RS12285) - 2600747..2601388 (+) 642 WP_086628370.1 GTP pyrophosphokinase family protein -
  ACKPBX_RS12315 (SNQ41_RS12290) - 2601412..2602242 (+) 831 WP_319995540.1 NAD kinase -
  ACKPBX_RS12320 (SNQ41_RS12295) - 2602245..2603198 (+) 954 WP_319995541.1 NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 68763.10 Da        Isoelectric Point: 4.6571

>NTDB_id=1161648 ACKPBX_RS12295 WP_086628373.1 2596895..2598712(+) (pepF) [MAG: Trichococcus shcherbakoviae isolate 3f5bddbc-f9f7-4dd9-9883-cce70881a83c]
MTNTQKRLKRAEVPETSTWDLTTIFATDEAFEKALDELAGAVPFVKALQGSIGSSSHSLLKGIEEVLKINQKLERVYVYS
HLKNDQDTADSLYQNLHDKALSILTSVSEATSWFEPEILEIPEDELEKYLAENEKLQPYAHLLDSLTSAREHVLSAREEE
LLAGAGEIFAAPSKTFSVLNNADITFPTVKNEEGQDVQLTHGLYGQLMESPDREVREGAFKALYQTYEGLKNTFATTLST
NVKAHNYKAKVHKYESARAAALANNHIPEAVYDTLLQVVNEHLPLLHRYVDLRKQLLGVEELHMYDMYTPLTGEAPIKYS
IEAATEETLRGLQPLGEDYQAILQEAFGNRWIDWLENEGKRSGAYSSGAYDTNPYILMNWQDSLNQLYTLVHELGHSVHS
YLTRKNQPYVYGDYSIFLAEIASTTNENILTDYLLKTQTDPKVRIYILNHYLDGFKGTIFRQTQFAEFEHYIHQQALAGV
PLTQDFMTSYYAELNAKYYGPSVEKDPEIGIEWTRIPHFYYNYYVYQYATGFSAATALAKRIVEGEEGALEQYLAYLKAG
NSDYPIEVMKKAGVDMTQSAYIEDAMKVFEERLNELEQLIAAQQA

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=1161648 ACKPBX_RS12295 WP_086628373.1 2596895..2598712(+) (pepF) [MAG: Trichococcus shcherbakoviae isolate 3f5bddbc-f9f7-4dd9-9883-cce70881a83c]
ATGACAAACACACAAAAACGACTGAAGAGAGCGGAGGTCCCGGAGACTTCCACATGGGATTTGACAACGATCTTTGCGAC
AGATGAAGCTTTCGAGAAAGCGTTGGACGAATTAGCGGGTGCAGTGCCGTTCGTGAAGGCCTTGCAAGGATCCATCGGCT
CAAGCAGTCACTCCTTGCTGAAAGGGATTGAAGAAGTCCTCAAGATCAACCAGAAATTGGAACGGGTCTATGTTTACTCC
CATCTGAAGAATGATCAGGATACTGCGGACAGCCTGTATCAGAATCTGCACGACAAAGCTTTGTCGATCTTGACGAGCGT
CAGTGAAGCGACTTCTTGGTTCGAACCGGAAATACTGGAGATTCCGGAGGACGAGCTGGAGAAATACTTGGCAGAGAACG
AAAAGTTGCAGCCGTATGCGCATCTTTTGGATAGCCTAACCTCTGCTCGTGAGCATGTCCTGTCCGCCAGAGAAGAAGAG
TTGTTGGCGGGGGCTGGGGAAATCTTTGCTGCGCCAAGCAAAACCTTCTCGGTTCTCAATAACGCAGACATCACCTTCCC
GACAGTCAAGAACGAGGAAGGCCAAGATGTCCAACTGACTCACGGTTTGTATGGGCAGCTGATGGAAAGTCCGGATCGGG
AAGTGCGCGAAGGGGCCTTCAAAGCGCTCTACCAAACGTATGAGGGTCTGAAAAATACGTTTGCGACCACCTTATCCACG
AACGTGAAGGCGCACAATTACAAAGCCAAAGTGCATAAATATGAATCTGCCCGTGCAGCGGCGCTGGCGAACAATCACAT
TCCGGAAGCGGTTTATGATACGTTGCTCCAGGTGGTCAATGAGCATCTGCCTTTGTTGCATCGCTATGTGGACTTGCGCA
AGCAATTGTTGGGTGTCGAGGAGTTGCATATGTACGATATGTATACCCCGTTGACAGGGGAGGCACCGATCAAATACAGC
ATCGAGGCGGCGACTGAAGAAACCTTGCGCGGCCTTCAGCCGCTGGGAGAGGATTATCAGGCTATCCTCCAGGAGGCATT
CGGCAACCGTTGGATCGACTGGCTTGAGAATGAGGGCAAACGCAGCGGAGCTTATTCTTCCGGCGCCTATGACACGAATC
CGTATATCCTGATGAATTGGCAAGATTCATTGAATCAACTGTATACCTTGGTCCATGAACTGGGTCACAGTGTGCACAGC
TATCTGACGAGAAAGAATCAGCCCTATGTGTACGGCGATTATTCGATTTTCCTGGCCGAAATCGCTTCGACAACAAACGA
AAATATTTTGACTGATTATTTGCTGAAGACCCAGACCGATCCCAAGGTCCGCATCTATATCTTGAATCATTACCTTGACG
GCTTCAAGGGAACGATCTTCCGTCAAACCCAATTTGCTGAATTTGAGCACTACATCCATCAGCAAGCCTTGGCAGGTGTT
CCTTTGACACAAGATTTCATGACTTCTTATTATGCAGAACTGAACGCCAAATATTATGGTCCAAGTGTCGAAAAGGACCC
TGAGATTGGAATCGAATGGACCCGCATCCCGCATTTCTACTATAATTACTACGTTTACCAATACGCAACCGGCTTTTCGG
CTGCGACGGCATTGGCAAAACGGATCGTTGAGGGAGAGGAAGGCGCGTTGGAGCAGTACCTTGCCTATCTGAAAGCAGGA
AACAGTGACTATCCGATTGAAGTGATGAAAAAAGCAGGCGTGGATATGACTCAGTCCGCTTACATTGAGGATGCCATGAA
AGTGTTCGAGGAACGTCTGAACGAACTGGAACAATTGATTGCGGCGCAACAAGCTTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(207-587)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5C5E909

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

54.992

97.686

0.537

Multiple sequence alignment