Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   ACKPBX_RS01330 Genome accession   NZ_OY762653
Coordinates   301320..303020 (-) Length   566 a.a.
NCBI ID   WP_319995786.1    Uniprot ID   -
Organism   MAG: Trichococcus shcherbakoviae isolate 3f5bddbc-f9f7-4dd9-9883-cce70881a83c     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 296320..308020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKPBX_RS01310 (SNQ41_RS01310) - 297055..298311 (-) 1257 WP_086627797.1 methionine gamma-lyase family protein -
  ACKPBX_RS01315 (SNQ41_RS01315) hflX 298295..299554 (-) 1260 WP_086627796.1 GTPase HflX -
  ACKPBX_RS01320 (SNQ41_RS01320) miaA 299593..300543 (-) 951 WP_319995785.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  ACKPBX_RS01325 (SNQ41_RS01325) - 300536..301276 (-) 741 WP_086628183.1 glycerophosphodiester phosphodiesterase -
  ACKPBX_RS01330 (SNQ41_RS01330) recN 301320..303020 (-) 1701 WP_319995786.1 DNA repair protein RecN Machinery gene
  ACKPBX_RS01335 (SNQ41_RS01335) - 303056..303898 (-) 843 WP_119093683.1 TlyA family RNA methyltransferase -
  ACKPBX_RS01340 (SNQ41_RS01340) - 303911..304804 (-) 894 WP_319995787.1 farnesyl diphosphate synthase -
  ACKPBX_RS01345 (SNQ41_RS01345) - 304810..305055 (-) 246 WP_086627792.1 exodeoxyribonuclease VII small subunit -
  ACKPBX_RS01350 (SNQ41_RS01350) xseA 305055..306389 (-) 1335 WP_319995788.1 exodeoxyribonuclease VII large subunit -
  ACKPBX_RS01355 (SNQ41_RS01355) folD 306406..307245 (-) 840 WP_319995789.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -
  ACKPBX_RS01360 (SNQ41_RS01360) nusB 307372..307827 (-) 456 WP_107995143.1 transcription antitermination factor NusB -

Sequence

Protein


Download         Length: 566 a.a.        Molecular weight: 63279.24 Da        Isoelectric Point: 4.7480

>NTDB_id=1161628 ACKPBX_RS01330 WP_319995786.1 301320..303020(-) (recN) [MAG: Trichococcus shcherbakoviae isolate 3f5bddbc-f9f7-4dd9-9883-cce70881a83c]
MLQELSIKNFAIIENLQVSFDEGMTVLTGETGAGKSIIIDAVGLLAGGRGSNDLIRYGENKTVIQGLFSIPENAKTVSVL
ESYGIEADGNQVLLQRELSRNGKNISRVNGTIVTVATLREVGETLIDIHGQNEHQELMDPQKHIDLLDQFAGNELREVKM
TYLNTYSKYVDTRKQLIQLKTDEKETVQRIDLLTFQIKEIEQAQLKDPEEDEKLEEERNLLVNYQKVMQALTSAYDSMQN
SEENGIDKIGLGMAALEKVQDINPVYQAIASSVSAAYYQLQECAGDILSEIEQLSYDEGRLNEIENRLELIRQLKRKYGN
TISEVLGHYEKISQELDLIENRESYLEKLNVDYNKAKEEILAIGKQLTAIRGKAAVVLEEQIQLQLKELYMEKVLFKTVF
HVQPGKLAITDNGLDHVEFYIATNVGEPLKALAKVASGGELSRMMLAMKAIFTKTQGITSIIFDEVDTGVSGRVAQAIAN
KIHLVASYSQVLCITHLPQVAAMADQHLYIEKEIIADRTKTHVKPLFGPERINEVARMLAGTDITELSLAHAKELLQLAD
TEKNKA

Nucleotide


Download         Length: 1701 bp        

>NTDB_id=1161628 ACKPBX_RS01330 WP_319995786.1 301320..303020(-) (recN) [MAG: Trichococcus shcherbakoviae isolate 3f5bddbc-f9f7-4dd9-9883-cce70881a83c]
ATGTTACAAGAGTTGTCCATTAAAAATTTTGCAATAATTGAAAATCTTCAAGTGAGTTTCGACGAGGGTATGACTGTGCT
GACTGGGGAAACCGGAGCAGGGAAATCCATCATCATCGATGCCGTCGGTCTGTTGGCAGGCGGAAGAGGATCCAACGATT
TGATTCGATACGGCGAAAACAAGACGGTCATCCAAGGGCTTTTCAGTATTCCCGAAAACGCCAAGACAGTGTCCGTGTTG
GAATCGTATGGAATAGAAGCGGATGGGAACCAAGTTCTGCTGCAACGGGAACTTTCCCGGAACGGTAAGAACATTTCCCG
CGTCAACGGCACAATCGTAACGGTTGCGACTCTGCGCGAAGTCGGCGAAACGCTGATCGATATCCACGGACAGAACGAGC
ATCAAGAATTGATGGATCCACAAAAACATATTGACCTGCTGGATCAGTTCGCCGGGAATGAACTGAGAGAAGTCAAAATG
ACATATCTCAATACTTATTCCAAATATGTGGATACACGTAAGCAATTGATCCAATTGAAGACAGACGAGAAAGAAACAGT
CCAAAGAATCGACTTGTTGACTTTCCAAATCAAGGAAATCGAGCAAGCGCAGTTGAAAGATCCTGAAGAGGATGAAAAAC
TGGAAGAAGAACGGAACCTGCTCGTCAATTATCAAAAAGTCATGCAAGCTTTAACGAGTGCGTACGATTCAATGCAGAAC
AGCGAAGAGAACGGCATCGACAAAATCGGTCTCGGCATGGCGGCGTTGGAAAAAGTGCAGGACATCAATCCGGTCTATCA
GGCAATCGCATCCTCGGTATCGGCAGCGTATTACCAACTGCAGGAATGCGCCGGGGACATCCTGTCAGAGATCGAGCAAT
TGTCCTACGATGAAGGGCGCTTGAACGAAATCGAGAACCGATTGGAATTGATCCGCCAGTTGAAGCGGAAATACGGAAAC
ACAATCAGTGAAGTGCTGGGGCATTACGAAAAGATATCCCAAGAGCTGGATCTGATCGAAAACCGGGAAAGCTACCTTGA
GAAACTCAATGTGGACTACAATAAAGCAAAAGAAGAGATTTTGGCTATCGGCAAACAACTGACAGCCATCCGCGGAAAAG
CCGCAGTCGTTCTGGAAGAACAGATCCAACTGCAGTTAAAGGAACTTTACATGGAAAAGGTCCTTTTCAAGACTGTTTTC
CATGTACAACCTGGGAAGCTTGCGATTACGGATAACGGGTTGGACCACGTGGAATTCTATATCGCTACGAACGTCGGCGA
ACCCCTGAAAGCATTGGCCAAGGTGGCCAGCGGCGGCGAACTCTCACGGATGATGTTGGCCATGAAGGCTATCTTTACCA
AAACGCAAGGCATCACCAGCATCATCTTTGATGAGGTTGATACAGGTGTTTCGGGCAGGGTAGCGCAAGCGATAGCCAAT
AAGATCCACTTGGTGGCCAGTTACTCGCAGGTGCTCTGCATCACGCATCTTCCGCAGGTGGCAGCGATGGCGGATCAGCA
TCTCTATATAGAAAAAGAGATCATTGCCGATCGGACAAAGACGCATGTCAAACCGCTGTTCGGGCCTGAACGCATCAACG
AAGTCGCACGCATGTTGGCGGGTACCGATATCACGGAGCTCTCATTGGCCCACGCAAAAGAATTGCTGCAGTTGGCCGAT
ACCGAAAAAAACAAAGCTTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

49.476

100

0.5

Multiple sequence alignment