Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACKU4N_RS01410 Genome accession   NZ_OY761461
Coordinates   317684..319060 (+) Length   458 a.a.
NCBI ID   WP_321319813.1    Uniprot ID   -
Organism   MAG: Labilibaculum sp. isolate 39fbe964-f1d1-47e5-b13f-1b1892be6b75     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 312684..324060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKU4N_RS01390 (U2973_RS01375) - 314765..315574 (-) 810 WP_321319809.1 glycogen/starch synthase -
  ACKU4N_RS01395 (U2973_RS01380) panC 315768..316607 (+) 840 WP_321319810.1 pantoate--beta-alanine ligase -
  ACKU4N_RS01400 (U2973_RS01385) panD 316625..316975 (+) 351 WP_321319811.1 aspartate 1-decarboxylase -
  ACKU4N_RS01405 (U2973_RS01390) rfaE2 317168..317671 (+) 504 WP_321319812.1 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase -
  ACKU4N_RS01410 (U2973_RS01395) radA 317684..319060 (+) 1377 WP_321319813.1 DNA repair protein RadA Machinery gene
  ACKU4N_RS01415 (U2973_RS01400) - 319427..321808 (-) 2382 WP_321319814.1 transglycosylase domain-containing protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49784.05 Da        Isoelectric Point: 7.9213

>NTDB_id=1161557 ACKU4N_RS01410 WP_321319813.1 317684..319060(+) (radA) [MAG: Labilibaculum sp. isolate 39fbe964-f1d1-47e5-b13f-1b1892be6b75]
MATKAKTKSAWFCQSCGVESTKWVGKCPSCGEWNSFVEEVVVKSTVSVIAGINGQGKKNKPQKISEIPSSEESRFDTKNG
ELNRVLGGGLVPGSLILIGGEPGIGKSTLALQIALNLKSYTTLYVSGEESAQQIKLRGNRINSNNENCLIVSETSMENIF
SHVKNTSPDIIVIDSIQTLATETIESAPGSISQIRECTSQLLRFAKESSTPVILIGHITKDGSLAGPKILEHMVDTVLQF
EGDQNHMYRILRSTKNRFGSTSEMGIYEMQHNGLREVSNPSELLLSQEDESLSGVTISASIEGMRPFLIEIQALVSSAAY
GTPQRSSTGFDLRRLNMLLAVLEKRAGFKLSTKDVFLNIAGGIKVNDPAIDLAVILAVLSSSTDISISKEVCFSGEIGLS
GEIRPVSRIDQRIGEAEKLGFKQIFIPKHNSKGLDTSKFKIKIHLVSKVGEVFQTLFR

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=1161557 ACKU4N_RS01410 WP_321319813.1 317684..319060(+) (radA) [MAG: Labilibaculum sp. isolate 39fbe964-f1d1-47e5-b13f-1b1892be6b75]
ATGGCCACCAAAGCAAAAACAAAAAGTGCCTGGTTTTGTCAGAGTTGTGGAGTAGAATCTACAAAATGGGTAGGGAAATG
CCCCTCTTGCGGAGAATGGAATTCCTTCGTTGAGGAAGTTGTTGTAAAATCAACGGTATCTGTAATTGCTGGAATAAATG
GACAGGGCAAAAAAAACAAGCCACAAAAAATATCTGAAATACCTTCGTCTGAAGAGTCCCGATTCGACACTAAAAACGGT
GAATTAAATCGAGTTTTAGGGGGCGGTTTAGTTCCCGGATCGTTAATATTAATTGGTGGTGAACCGGGAATTGGTAAATC
AACACTTGCTCTTCAAATTGCCCTGAATTTAAAAAGTTATACTACCTTATATGTGTCGGGGGAGGAGAGTGCCCAACAGA
TAAAATTGCGTGGGAATCGAATAAATTCGAATAATGAAAACTGTCTGATCGTTAGCGAAACCTCTATGGAGAATATTTTT
TCTCATGTGAAAAACACTTCTCCGGATATTATAGTTATTGATTCTATTCAAACTCTTGCGACGGAAACCATTGAGTCAGC
ACCGGGGAGCATATCACAAATTAGAGAGTGTACATCTCAACTATTAAGATTTGCTAAAGAATCATCTACGCCTGTAATTT
TAATTGGGCACATCACCAAAGATGGAAGTTTGGCCGGGCCTAAAATTTTAGAGCATATGGTGGATACTGTTCTTCAGTTT
GAAGGAGATCAGAACCACATGTACCGAATATTACGATCTACAAAAAATCGGTTCGGCTCCACTTCCGAAATGGGAATTTA
TGAAATGCAGCACAATGGACTCCGTGAGGTGTCTAATCCATCAGAGCTTCTTCTGTCGCAGGAAGATGAAAGTCTGAGTG
GTGTGACTATTTCTGCATCAATAGAGGGAATGCGTCCTTTCCTAATAGAAATACAAGCTTTGGTTAGTTCAGCAGCTTAC
GGAACACCTCAACGTTCATCTACAGGTTTTGATCTTCGTCGTTTAAATATGTTATTAGCCGTTTTGGAAAAGCGCGCGGG
CTTCAAACTTTCGACCAAGGATGTATTTTTAAATATTGCAGGAGGAATTAAGGTAAATGATCCAGCTATCGATTTGGCAG
TAATTCTTGCTGTTTTGTCATCAAGCACAGATATTTCTATTTCTAAGGAAGTCTGTTTTTCCGGGGAAATTGGATTGTCA
GGAGAGATTAGACCTGTTAGTAGAATAGATCAACGTATCGGCGAAGCTGAAAAATTAGGATTCAAGCAAATTTTTATTCC
AAAGCACAATTCCAAAGGACTTGACACCTCAAAATTTAAAATAAAAATTCATTTGGTCAGCAAGGTTGGAGAAGTATTCC
AAACCCTTTTCAGATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(65-222)

Subunit ChlI of Mg-chelatase (ChlI)

(345-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(12-38)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.762

99.127

0.513
  radA Streptococcus mitis SK321

49.119

99.127

0.487
  radA Streptococcus mitis NCTC 12261

49.119

99.127

0.487
  radA Streptococcus pneumoniae Rx1

49.119

99.127

0.487
  radA Streptococcus pneumoniae D39

49.119

99.127

0.487
  radA Streptococcus pneumoniae R6

49.119

99.127

0.487
  radA Streptococcus pneumoniae TIGR4

49.119

99.127

0.487

Multiple sequence alignment