Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACLMBR_RS11010 Genome accession   NZ_OY761017
Coordinates   2287389..2288771 (+) Length   460 a.a.
NCBI ID   WP_086628780.1    Uniprot ID   A0A5C5E6C0
Organism   MAG: Trichococcus shcherbakoviae isolate 89b17532-9bee-499f-becb-1a49c542a750     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2282389..2293771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLMBR_RS10995 (U2929_RS10995) - 2283483..2284982 (+) 1500 WP_411354490.1 alpha-amylase -
  ACLMBR_RS11000 (U2929_RS11000) - 2285281..2286390 (-) 1110 WP_321378593.1 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC -
  ACLMBR_RS11005 (U2929_RS11005) - 2286740..2287285 (+) 546 WP_321378595.1 dUTP diphosphatase -
  ACLMBR_RS11010 (U2929_RS11010) radA 2287389..2288771 (+) 1383 WP_086628780.1 DNA repair protein RadA Machinery gene
  ACLMBR_RS11015 (U2929_RS11015) - 2288798..2289892 (+) 1095 WP_086628844.1 PIN/TRAM domain-containing protein -
  ACLMBR_RS11020 (U2929_RS11020) gltX 2289941..2291410 (+) 1470 WP_086628781.1 glutamate--tRNA ligase -
  ACLMBR_RS11025 (U2929_RS11025) epsC 2291488..2292006 (+) 519 WP_086628782.1 serine O-acetyltransferase EpsC -
  ACLMBR_RS11030 (U2929_RS11030) cysS 2292094..2293506 (+) 1413 WP_321378600.1 cysteine--tRNA ligase -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 50675.08 Da        Isoelectric Point: 7.1211

>NTDB_id=1161546 ACLMBR_RS11010 WP_086628780.1 2287389..2288771(+) (radA) [MAG: Trichococcus shcherbakoviae isolate 89b17532-9bee-499f-becb-1a49c542a750]
MAKKNAVKYVCQACGYESPKWLGRCPNCNTWNQMEEEREATKAVKQQQRSNFSGNVPEAIAIQDIKTENLPRVKTQMEEV
NHVLGGGIVPGSLILIGGDPGIGKSTLLLQVSAQINQGGHRVLYISGEESASQIKLRAERLGVKGTDFYIYPETDVDAIR
STIERIKPEFVIVDSIQTMIHPDITSTAGSVTQVRECTAEFMRIAKSNDIAIFIVGHVTKEGAIAGPRMLEHMVDTVLYF
EGDRHHAFRILRAVKNRFGSTDEIGVFEMIEGGLREVRNPSELFLEERLAGASGSAVVASLEGTRPILAEIQCLITPTVF
GNARRTASGLDYNRVSLIMAVLEKRAGLLLQNQDAYFKSTGGVKLDEPAIDLAVAVSIASSYWDTETSATECFIGEIGLT
GEIRRVSRIEQRVNEAEKLGFTKVYLPKNNMAGWKHPKGIQIIPVATLQETLRKVFPNKN

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=1161546 ACLMBR_RS11010 WP_086628780.1 2287389..2288771(+) (radA) [MAG: Trichococcus shcherbakoviae isolate 89b17532-9bee-499f-becb-1a49c542a750]
TTGGCAAAAAAAAATGCAGTGAAATACGTTTGTCAGGCTTGCGGGTACGAGTCGCCGAAATGGCTGGGACGTTGCCCGAA
CTGCAACACTTGGAACCAAATGGAGGAAGAGCGGGAAGCGACGAAAGCAGTGAAGCAACAGCAGCGTTCCAATTTCAGCG
GGAATGTACCTGAAGCAATCGCCATCCAGGACATCAAGACCGAAAATCTGCCGCGCGTCAAAACGCAGATGGAAGAAGTC
AACCATGTACTGGGCGGAGGCATCGTGCCCGGTTCGCTGATCCTGATCGGCGGCGATCCCGGCATCGGCAAGTCCACTTT
GCTGCTGCAGGTTTCGGCGCAGATCAACCAAGGCGGTCACCGCGTTCTTTACATCTCCGGAGAGGAAAGCGCGAGTCAAA
TCAAATTGAGGGCGGAGCGGCTAGGGGTCAAGGGCACCGACTTCTACATCTACCCGGAAACGGATGTCGACGCGATCCGC
AGCACAATCGAGCGGATCAAGCCGGAATTCGTCATCGTGGACTCGATTCAGACGATGATCCATCCGGACATCACGAGCAC
GGCCGGCAGTGTAACGCAAGTGCGTGAATGCACCGCCGAATTCATGCGGATCGCGAAGAGCAACGACATCGCGATATTCA
TCGTCGGACACGTGACGAAGGAAGGCGCCATCGCCGGACCGCGGATGCTGGAGCATATGGTGGATACGGTGCTGTATTTT
GAAGGCGATCGGCATCATGCTTTCCGGATCCTGCGCGCCGTCAAAAACCGTTTCGGATCGACCGATGAAATCGGTGTTTT
CGAAATGATCGAGGGCGGCTTGCGCGAGGTGCGGAATCCTTCCGAACTGTTCCTGGAAGAGCGGCTCGCCGGAGCATCCG
GATCGGCAGTCGTTGCCTCGCTTGAGGGCACGCGCCCGATTTTGGCCGAGATCCAATGTCTGATCACGCCGACTGTCTTC
GGGAATGCCCGCCGGACTGCGAGCGGCTTGGACTACAATCGGGTTTCCCTGATCATGGCCGTGTTGGAAAAACGGGCGGG
CTTGCTGCTTCAGAACCAGGATGCCTACTTCAAATCGACAGGCGGCGTGAAGCTGGATGAGCCGGCCATCGACTTGGCAG
TGGCGGTCAGCATCGCCTCAAGCTATTGGGACACCGAGACTTCCGCGACAGAGTGTTTTATCGGCGAAATCGGCCTGACC
GGAGAAATCCGCAGGGTCAGCCGGATCGAGCAACGCGTCAACGAAGCTGAAAAATTGGGCTTCACGAAGGTGTATCTGCC
GAAGAACAATATGGCTGGCTGGAAGCACCCGAAAGGGATCCAGATCATTCCTGTCGCAACGCTTCAAGAGACGCTGCGCA
AAGTATTTCCGAATAAAAATTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(367-430)

AAA domain (AAA_25)

(71-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5C5E6C0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

67.544

99.13

0.67
  radA Streptococcus pneumoniae D39

67.544

99.13

0.67
  radA Streptococcus pneumoniae R6

67.544

99.13

0.67
  radA Streptococcus pneumoniae TIGR4

67.544

99.13

0.67
  radA Streptococcus mitis NCTC 12261

67.544

99.13

0.67
  radA Streptococcus mitis SK321

67.325

99.13

0.667
  radA Bacillus subtilis subsp. subtilis str. 168

64.912

99.13

0.643

Multiple sequence alignment