Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ACLMBR_RS05785 Genome accession   NZ_OY761017
Coordinates   1170675..1172492 (-) Length   605 a.a.
NCBI ID   WP_321381444.1    Uniprot ID   -
Organism   MAG: Trichococcus shcherbakoviae isolate 89b17532-9bee-499f-becb-1a49c542a750     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1165675..1177492
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLMBR_RS05760 (U2929_RS05760) - 1166197..1167150 (-) 954 WP_321381435.1 NAD(P)-dependent oxidoreductase -
  ACLMBR_RS05765 (U2929_RS05765) - 1167153..1167983 (-) 831 WP_321381437.1 NAD kinase -
  ACLMBR_RS05770 (U2929_RS05770) - 1168007..1168648 (-) 642 WP_321381439.1 GTP pyrophosphokinase family protein -
  ACLMBR_RS05775 (U2929_RS05775) - 1168943..1169536 (+) 594 WP_321381441.1 CYTH domain-containing protein -
  ACLMBR_RS05780 (U2929_RS05780) - 1169896..1170594 (+) 699 WP_119093178.1 DsbA family protein -
  ACLMBR_RS05785 (U2929_RS05785) pepF 1170675..1172492 (-) 1818 WP_321381444.1 oligoendopeptidase F Regulator
  ACLMBR_RS05790 (U2929_RS05790) - 1172575..1173741 (-) 1167 WP_321381446.1 competence protein CoiA -
  ACLMBR_RS05795 (U2929_RS05795) - 1174040..1174702 (-) 663 WP_234402605.1 adaptor protein MecA -
  ACLMBR_RS05800 (U2929_RS05800) spxA 1174921..1175319 (-) 399 WP_086985466.1 transcriptional regulator SpxA -
  ACLMBR_RS05805 (U2929_RS05805) trpS 1175709..1176701 (+) 993 WP_321381452.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 68694.16 Da        Isoelectric Point: 4.6952

>NTDB_id=1161540 ACLMBR_RS05785 WP_321381444.1 1170675..1172492(-) (pepF) [MAG: Trichococcus shcherbakoviae isolate 89b17532-9bee-499f-becb-1a49c542a750]
MTSTQKRLKRAEVPETSTWDLTAIFATDEAFEKALDELAGAVPFVKALQGSIGSSSQSLLKGIEEVLKINQKLERVYVYS
HLKNDQDTADSLYQNLHDKALSILTSVSEATSWFEPEILEIPEDELEKYLAENEKLQPYAHLLDSLTSAREHVLSAREEE
LLAGAGEIFAAPSKTFSVLNNADITFPTVKNEEGQDVQLTHGLYGQLMESPDREVREGAFKALYQTYEGLKNTFATTLST
NVKAHNYKAKVHKYESARAAALANNHIPEAVYDTLLHVVNEHLPLLHRYVDLRKELLGVEELHMYDMYTPLTGEAPIKYS
IEAATEETLKGLQPLGEDYLAILKEAFGNRWIDWLENEGKRSGAYSSGAYDTNPYILMNWQDSLNQLYTLVHELGHSVHS
YLTRKNQPYVYGDYSIFLAEIASTTNENILTDYLLKTQTDPKVRIYILNHYLDGFKGTIFRQTQFAEFEHYIHQQALAGV
PLTQDFMTSYYAELNAKYYGPTVEKDPEIGIEWTRIPHFYYNYYVYQYATGFSAATALAKRIVEGEEGALEKYLSYLKAG
NSDYPIEVMKKAGVDMTQSAYIEDAMKVFEERLNELEQLIAAQQA

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=1161540 ACLMBR_RS05785 WP_321381444.1 1170675..1172492(-) (pepF) [MAG: Trichococcus shcherbakoviae isolate 89b17532-9bee-499f-becb-1a49c542a750]
ATGACAAGCACACAGAAACGACTGAAGAGAGCGGAGGTCCCGGAGACTTCCACATGGGATTTGACAGCGATCTTTGCGAC
AGATGAAGCTTTCGAGAAAGCGTTGGACGAATTAGCGGGTGCAGTGCCGTTCGTGAAGGCCTTGCAAGGATCCATCGGCT
CAAGCAGTCAATCTTTGCTGAAAGGGATTGAAGAAGTCCTCAAGATCAACCAGAAATTGGAACGGGTCTATGTTTACTCC
CATCTGAAGAATGATCAGGATACTGCAGACAGCCTGTATCAGAATCTGCACGACAAAGCTTTGTCGATCTTGACGAGCGT
CAGTGAAGCGACTTCTTGGTTCGAACCGGAAATACTGGAGATTCCAGAGGACGAGCTGGAGAAATACTTGGCAGAGAACG
AAAAGCTGCAGCCGTATGCGCATCTTTTGGATAGCCTAACCTCTGCTCGTGAGCATGTCCTGTCCGCCAGAGAAGAAGAG
CTGTTGGCGGGGGCTGGGGAAATTTTTGCTGCGCCAAGCAAAACTTTTTCGGTTCTCAATAACGCAGACATCACCTTCCC
GACAGTCAAGAACGAGGAGGGCCAAGATGTCCAACTGACTCACGGTTTGTATGGGCAGTTGATGGAAAGTCCGGATCGGG
AAGTGCGAGAAGGGGCCTTCAAAGCGCTCTACCAAACGTATGAGGGTCTGAAGAATACGTTTGCGACCACCTTATCCACG
AACGTGAAGGCGCACAATTACAAAGCCAAAGTGCATAAATATGAATCCGCCCGTGCAGCGGCGCTGGCGAACAATCACAT
TCCGGAAGCAGTTTATGATACATTGCTCCACGTAGTCAATGAGCATCTGCCTTTGTTGCATCGCTATGTGGACTTGCGCA
AGGAGTTGTTGGGTGTAGAGGAGTTGCATATGTATGATATGTATACGCCGTTGACGGGGGAAGCTCCGATCAAATACAGC
ATCGAGGCTGCGACGGAAGAAACCTTGAAAGGTCTTCAGCCGCTGGGAGAAGATTATTTGGCTATACTCAAGGAAGCATT
CGGCAACCGTTGGATTGACTGGCTTGAGAATGAGGGCAAACGCAGCGGAGCTTATTCTTCCGGCGCCTATGACACGAATC
CATATATCCTGATGAACTGGCAAGATTCATTGAATCAATTGTACACTTTGGTCCATGAACTGGGTCATAGTGTGCACAGC
TATCTGACAAGAAAGAATCAGCCTTATGTATACGGCGATTATTCGATTTTCCTGGCCGAAATCGCTTCGACAACGAACGA
AAATATTTTGACTGATTACTTGCTGAAGACCCAAACCGATCCAAAGGTCCGCATCTATATTTTGAATCATTACCTGGACG
GCTTTAAGGGAACGATTTTCCGCCAAACCCAATTTGCTGAATTTGAGCACTACATCCATCAGCAAGCCTTGGCAGGTGTT
CCGTTGACGCAAGATTTCATGACTTCCTATTATGCAGAACTGAATGCCAAATATTATGGTCCGACCGTCGAAAAGGATCC
TGAGATCGGCATCGAATGGACCCGCATCCCGCATTTCTACTATAATTATTACGTTTACCAATACGCTACCGGCTTTTCGG
CTGCAACGGCATTGGCAAAACGCATCGTGGAGGGTGAGGAAGGCGCGCTGGAGAAGTACCTTTCCTATCTGAAAGCAGGA
AACAGCGACTATCCGATTGAAGTGATGAAAAAAGCAGGCGTGGATATGACCCAGTCCGCTTACATCGAGGATGCTATGAA
AGTGTTCGAGGAACGTCTGAATGAACTGGAACAATTGATTGCAGCGCAACAAGCGTAG

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(207-587)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

54.822

97.686

0.536

Multiple sequence alignment