Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   ACLMBP_RS12185 Genome accession   NZ_OY760436
Coordinates   2343175..2344872 (-) Length   565 a.a.
NCBI ID   WP_074036709.1    Uniprot ID   -
Organism   MAG: Exiguobacterium profundum isolate 8ac3ae97-4b35-4674-8cf6-a299ed097117     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2338175..2349872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLMBP_RS12165 (U2924_RS12140) yqiS 2338744..2339640 (-) 897 WP_196430847.1 phosphate butyryltransferase -
  ACLMBP_RS12170 (U2924_RS12145) - 2339762..2341399 (-) 1638 WP_159562456.1 sigma 54-interacting transcriptional regulator -
  ACLMBP_RS12175 (U2924_RS12150) - 2341534..2341782 (+) 249 WP_031423346.1 DUF2627 domain-containing protein -
  ACLMBP_RS12180 (U2924_RS12155) spo0A 2342443..2343174 (-) 732 WP_074036711.1 sporulation transcription factor Spo0A -
  ACLMBP_RS12185 (U2924_RS12160) recN 2343175..2344872 (-) 1698 WP_074036709.1 DNA repair protein RecN Machinery gene
  ACLMBP_RS12190 (U2924_RS12165) ahrC 2344886..2345335 (-) 450 WP_012726567.1 transcriptional regulator AhrC/ArgR -
  ACLMBP_RS12195 (U2924_RS12170) - 2345491..2346306 (-) 816 WP_159562457.1 TlyA family RNA methyltransferase -
  ACLMBP_RS12200 (U2924_RS12175) dxs 2346313..2348205 (-) 1893 WP_196431845.1 1-deoxy-D-xylulose-5-phosphate synthase -
  ACLMBP_RS12205 (U2924_RS12180) - 2348329..2349207 (-) 879 WP_321284848.1 farnesyl diphosphate synthase -
  ACLMBP_RS12210 (U2924_RS12185) xseB 2349204..2349428 (-) 225 WP_012726571.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 565 a.a.        Molecular weight: 63579.18 Da        Isoelectric Point: 4.6737

>NTDB_id=1161491 ACLMBP_RS12185 WP_074036709.1 2343175..2344872(-) (recN) [MAG: Exiguobacterium profundum isolate 8ac3ae97-4b35-4674-8cf6-a299ed097117]
MLAELSIKQFAIIDELNIPFNRGMTVLTGETGAGKSILLDAIGLLVGGRGSSEFVRYGQDKAEIEGLFMIEPDHPVIEAA
EQYGIDVEDGTVILRRDLHSSGKSVCRVNGKMMPLSTLREFGRLLVDIHGQHEHQHLMDAEFHLGILDHFAEKEISPLVE
EYQTAFAAWKQVADELKRLSQSEQELAQRMDLLSFQTKEIEAAELKVGEEQALTEERDELANFERIHQHIRLSYEAVAEE
SNGLDQIGVAMREMEEASQLSSSLTSVSETISNAYYLLEDAKFQLRDQLDSLEFDPIRLDEIESRLALFQQLKRKYGTTI
EEVITYGEQVSDELKSMTNREEHLQTLSDELIRLEQIARDAGMRLSSARKVAAESLQHAIHRELKELYMEKTAFEVRFKT
TSLKQDGLDDVEFYMMTNVGEPFKPLAKVASGGELSRVMLALKSIFSRTVGVASIIFDEVDTGVSGRVAQAMGEKIFRLS
VGSQVLCITHLAQVAAMADQHLYITKTETNERTKTNVTSLDRESRIDELGRMIAGAQMTDLTKQHVEELLEMSQQVKQKF
IKGVS

Nucleotide


Download         Length: 1698 bp        

>NTDB_id=1161491 ACLMBP_RS12185 WP_074036709.1 2343175..2344872(-) (recN) [MAG: Exiguobacterium profundum isolate 8ac3ae97-4b35-4674-8cf6-a299ed097117]
ATGTTAGCAGAACTATCAATCAAACAGTTTGCGATTATTGACGAATTAAACATTCCGTTTAATCGAGGTATGACTGTGCT
CACGGGTGAGACAGGTGCCGGTAAATCGATCTTGTTGGATGCGATTGGATTGCTTGTTGGAGGACGTGGCTCAAGTGAGT
TCGTGCGATATGGTCAAGATAAAGCTGAAATCGAAGGTCTGTTCATGATTGAACCGGATCACCCGGTCATCGAAGCGGCC
GAACAATATGGCATCGATGTTGAAGATGGGACAGTCATCTTACGTCGAGACCTACATAGTAGCGGGAAGAGCGTCTGCCG
TGTGAACGGGAAAATGATGCCGCTCTCGACGTTACGGGAGTTCGGACGGCTCCTGGTCGATATTCACGGTCAACATGAAC
ATCAACATTTAATGGATGCGGAATTTCACCTTGGCATATTAGACCATTTCGCCGAAAAAGAAATCAGTCCGTTAGTCGAG
GAATATCAAACGGCATTTGCGGCTTGGAAACAAGTCGCCGATGAATTGAAGCGTCTTAGTCAAAGTGAGCAGGAGCTTGC
TCAACGAATGGATCTTTTGTCGTTTCAAACGAAAGAAATCGAAGCGGCTGAATTAAAAGTTGGGGAAGAACAGGCGTTGA
CAGAAGAACGGGATGAATTGGCCAACTTTGAACGCATTCATCAACACATTCGTCTCTCGTATGAGGCGGTTGCCGAGGAG
TCAAATGGACTCGATCAAATCGGAGTGGCGATGCGCGAGATGGAAGAGGCGTCACAGCTCTCTTCGTCTTTGACATCTGT
ATCGGAAACTATCTCTAACGCTTATTATTTGTTGGAGGATGCAAAGTTTCAACTCCGGGACCAGTTAGATTCGCTCGAAT
TTGACCCGATTCGATTGGATGAGATTGAGTCACGATTGGCTCTTTTCCAGCAATTGAAACGAAAGTATGGGACGACCATC
GAAGAAGTCATCACCTATGGCGAACAAGTGTCGGATGAATTGAAGTCGATGACGAACCGGGAAGAGCATTTACAGACGCT
CTCAGATGAACTCATTCGATTAGAGCAGATTGCAAGAGATGCTGGTATGAGACTCTCTTCAGCGCGTAAGGTGGCTGCGG
AGTCGCTTCAGCATGCGATTCATCGAGAACTGAAAGAACTATATATGGAAAAAACAGCGTTCGAGGTCCGTTTCAAAACC
ACATCGCTTAAACAAGATGGTTTAGATGACGTGGAGTTTTACATGATGACGAACGTTGGAGAACCGTTCAAACCGCTCGC
AAAAGTCGCTTCAGGAGGTGAGCTTTCCCGTGTCATGCTCGCACTCAAATCCATCTTTTCAAGAACGGTCGGCGTGGCCT
CCATTATTTTTGACGAGGTCGACACAGGAGTCTCTGGACGTGTCGCGCAGGCGATGGGTGAAAAGATCTTCCGACTTTCT
GTCGGCTCTCAAGTCCTCTGTATCACGCACTTGGCACAAGTTGCTGCGATGGCAGACCAACATCTTTACATTACTAAAAC
CGAAACGAATGAACGGACGAAAACAAATGTGACGTCCCTCGACCGTGAAAGTCGAATCGACGAATTGGGTCGCATGATTG
CTGGCGCTCAAATGACAGACTTGACGAAGCAACACGTCGAAGAATTACTTGAGATGTCACAACAAGTAAAACAGAAGTTC
ATCAAAGGAGTGTCATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

53.646

100

0.547

Multiple sequence alignment