Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACLMBP_RS03010 Genome accession   NZ_OY760436
Coordinates   577671..579047 (-) Length   458 a.a.
NCBI ID   WP_012727704.1    Uniprot ID   A0A653USY8
Organism   MAG: Exiguobacterium profundum isolate 8ac3ae97-4b35-4674-8cf6-a299ed097117     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 572671..584047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLMBP_RS02985 (U2924_RS02975) cysE 572835..573524 (-) 690 WP_159563157.1 serine O-acetyltransferase -
  ACLMBP_RS02990 (U2924_RS02980) gltX 573783..575240 (-) 1458 WP_201302271.1 glutamate--tRNA ligase -
  ACLMBP_RS02995 (U2924_RS02985) ispF 575286..575759 (-) 474 WP_012727701.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  ACLMBP_RS03000 (U2924_RS02990) ispD 575756..576436 (-) 681 WP_012727702.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  ACLMBP_RS03005 (U2924_RS02995) - 576492..577556 (-) 1065 WP_012727703.1 PIN/TRAM domain-containing protein -
  ACLMBP_RS03010 (U2924_RS03000) radA 577671..579047 (-) 1377 WP_012727704.1 DNA repair protein RadA Machinery gene
  ACLMBP_RS03015 (U2924_RS03005) - 579104..581539 (-) 2436 WP_012727705.1 ATP-dependent Clp protease ATP-binding subunit -
  ACLMBP_RS03020 (U2924_RS03010) - 581564..582607 (-) 1044 WP_159563159.1 protein arginine kinase -
  ACLMBP_RS03025 (U2924_RS03015) - 582607..583041 (-) 435 WP_074035342.1 UvrB/UvrC motif-containing protein -
  ACLMBP_RS03030 (U2924_RS03020) - 583047..583523 (-) 477 WP_074035340.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49845.46 Da        Isoelectric Point: 6.8954

>NTDB_id=1161473 ACLMBP_RS03010 WP_012727704.1 577671..579047(-) (radA) [MAG: Exiguobacterium profundum isolate 8ac3ae97-4b35-4674-8cf6-a299ed097117]
MAKIKTKYVCQSCGYESAKWMGRCPGCNEWNTLVEEFVEEKKAKRGAAFVHSSSRQLKPERLANVVSQEETRVHTNSREF
DRVLGGGIVPGSLVLVGGDPGIGKSTILLQVSAHLAHSGKKVLYISGEESLKQTKLRAERLGLPTDDLFVLAETDMLMIE
RVIDEEQPGFVIIDSIQTVYMDEIQSAPGSVSQVRECTAALMKIAKTRGIAVFIVGHVTKQGSIAGPRLLEHMVDAVLYF
EGERHHTFRILRAVKNRFGSTNEIGIFEMKESGLEEVLNPSEIFLEERTAGVSGSTVVASMEGTRTVLVELQALISPTSF
GNPRRMATGIDQNRVALLMAVLEKRSGLLLQTQDAYLKAAGGVKLDEPAIDLAICISIASSFRDRPTRPTDVCIGEVGLT
GEVRRVSRIEQRVAEAAKLGFTRAIIPKNNMGGWTAPAGIEVVGVGTVDEALQLAIPF

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=1161473 ACLMBP_RS03010 WP_012727704.1 577671..579047(-) (radA) [MAG: Exiguobacterium profundum isolate 8ac3ae97-4b35-4674-8cf6-a299ed097117]
ATGGCCAAAATTAAAACGAAATACGTCTGCCAATCGTGCGGATATGAATCAGCCAAGTGGATGGGGCGTTGTCCGGGTTG
TAATGAATGGAATACGCTCGTCGAAGAGTTTGTAGAAGAGAAGAAAGCCAAACGTGGAGCGGCCTTTGTGCATAGTTCAT
CGCGACAATTGAAACCGGAACGCTTAGCGAACGTCGTCTCACAAGAAGAGACGCGCGTGCATACGAATAGTCGTGAATTT
GACCGTGTCCTCGGCGGTGGGATTGTCCCAGGTTCACTCGTTTTAGTCGGCGGGGACCCGGGAATCGGGAAGTCGACCAT
TCTGTTACAGGTTAGCGCTCACTTAGCCCATAGTGGTAAAAAGGTGTTATACATCTCGGGGGAGGAATCTCTCAAACAGA
CAAAACTTCGTGCGGAACGGCTCGGTTTACCGACCGATGACTTGTTCGTGCTCGCTGAGACGGACATGTTGATGATCGAA
CGGGTTATTGATGAGGAGCAACCTGGATTTGTCATCATTGACTCGATTCAAACGGTATATATGGATGAGATTCAATCGGC
GCCAGGGAGCGTGTCACAAGTTCGAGAATGTACGGCCGCCCTCATGAAAATTGCGAAAACGCGAGGGATTGCGGTCTTCA
TCGTCGGTCACGTGACGAAGCAAGGGTCGATTGCCGGCCCGCGCTTACTTGAACATATGGTCGATGCGGTACTTTATTTT
GAAGGGGAGCGTCATCATACGTTCCGTATTTTACGGGCGGTGAAAAACCGTTTTGGATCGACGAACGAGATTGGCATTTT
CGAGATGAAAGAGAGTGGACTAGAGGAAGTGCTTAATCCATCTGAAATATTCTTGGAGGAACGCACGGCGGGCGTATCGG
GTTCGACCGTTGTCGCCTCGATGGAAGGTACGCGGACGGTACTCGTGGAACTCCAAGCACTCATCTCTCCGACATCGTTC
GGGAACCCGAGACGTATGGCCACGGGCATTGATCAAAACCGAGTCGCGCTGCTCATGGCCGTGCTCGAAAAACGTTCCGG
TCTCTTGCTTCAGACGCAGGATGCGTACTTGAAAGCAGCCGGTGGCGTCAAACTGGACGAACCGGCGATTGACCTTGCGA
TTTGTATCTCGATTGCCTCGAGTTTCCGCGATCGTCCGACTCGTCCGACGGATGTCTGCATCGGTGAGGTCGGATTGACT
GGGGAAGTGCGACGGGTTTCCCGAATCGAGCAACGTGTCGCCGAGGCGGCAAAACTAGGTTTTACACGGGCCATCATCCC
GAAAAATAACATGGGGGGATGGACCGCTCCGGCAGGGATTGAAGTCGTCGGGGTCGGAACAGTGGATGAAGCACTCCAGT
TGGCGATTCCGTTCTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(364-430)

AAA domain (AAA_25)

(71-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A653USY8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

73.684

99.563

0.734
  radA Streptococcus mitis SK321

61.81

98.908

0.611
  radA Streptococcus mitis NCTC 12261

61.81

98.908

0.611
  radA Streptococcus pneumoniae Rx1

61.81

98.908

0.611
  radA Streptococcus pneumoniae D39

61.81

98.908

0.611
  radA Streptococcus pneumoniae R6

61.81

98.908

0.611
  radA Streptococcus pneumoniae TIGR4

61.81

98.908

0.611

Multiple sequence alignment