Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   ACORJQ_RS03175 Genome accession   NZ_OY759719
Coordinates   764632..765630 (-) Length   332 a.a.
NCBI ID   WP_321326835.1    Uniprot ID   -
Organism   MAG: Thiomicrorhabdus sp. isolate cfc1d0dd-18bb-48af-b12b-b905256c9fab     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 759632..770630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACORJQ_RS03145 (U2926_RS03140) - 760140..760904 (+) 765 WP_321325935.1 type III pantothenate kinase -
  ACORJQ_RS03155 (U2926_RS03150) fabA 761161..761676 (+) 516 WP_321325937.1 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA -
  ACORJQ_RS03160 (U2926_RS03155) fabB 761679..762899 (+) 1221 WP_321325939.1 beta-ketoacyl-ACP synthase I -
  ACORJQ_RS03165 (U2926_RS03160) - 763162..763749 (-) 588 WP_321325940.1 transglycosylase SLT domain-containing protein -
  ACORJQ_RS03170 (U2926_RS03165) - 763749..764609 (-) 861 WP_321325941.1 DUF2914 domain-containing protein -
  ACORJQ_RS03175 (U2926_RS03170) pilA 764632..765630 (-) 999 WP_321326835.1 signal recognition particle-docking protein FtsY Machinery gene
  ACORJQ_RS03180 (U2926_RS03175) - 766437..767825 (+) 1389 WP_321325943.1 pitrilysin family protein -
  ACORJQ_RS03185 (U2926_RS03180) - 767825..769144 (+) 1320 WP_321325944.1 pitrilysin family protein -
  ACORJQ_RS03190 (U2926_RS03185) - 769216..769737 (-) 522 WP_321325945.1 hypothetical protein -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 36132.32 Da        Isoelectric Point: 4.9109

>NTDB_id=1161447 ACORJQ_RS03175 WP_321326835.1 764632..765630(-) (pilA) [MAG: Thiomicrorhabdus sp. isolate cfc1d0dd-18bb-48af-b12b-b905256c9fab]
MSNGDIAIEKTEQVEQPQKVSFFTRLKNGLSKTRQSFTDSLASLVLGRKEIDEDLLDDLEMILLTADVGIDATDRIIKNL
TEQVSRKELKDPEALINALKVQLQEIIDPMSQPLDIDSHLAKNAGPFVILMVGINGVGKTTTIGKLAKKYQLEGKSVMLA
AGDTFRAAAVEQLQTWGERNNVPVMAQKTGADSAAVIFDAIQSAKAKKIDILIADTAGRLHTQSNLMEELKKVKRVIAKV
DETAPHEVMLVIDAGTGQNALNQAQQFQEAVNVSGITLTKLDGTAKGGIVFALAEQRQIPIRFIGVGESIDDLRSFDSKS
FTEALFDQSQNS

Nucleotide


Download         Length: 999 bp        

>NTDB_id=1161447 ACORJQ_RS03175 WP_321326835.1 764632..765630(-) (pilA) [MAG: Thiomicrorhabdus sp. isolate cfc1d0dd-18bb-48af-b12b-b905256c9fab]
ATGTCTAATGGCGATATTGCTATTGAGAAAACCGAGCAAGTTGAACAACCGCAAAAAGTAAGCTTCTTCACCCGTTTAAA
AAATGGACTCAGCAAAACTCGCCAGAGCTTCACTGATAGTTTGGCAAGCCTAGTATTAGGTCGCAAAGAAATTGATGAAG
ATCTATTAGATGATCTTGAGATGATTTTGTTAACCGCCGATGTAGGAATCGACGCAACCGATAGAATCATCAAAAACCTC
ACTGAACAAGTCTCTCGTAAAGAACTAAAAGACCCTGAAGCATTAATTAATGCCCTTAAAGTTCAGCTTCAAGAGATAAT
TGATCCAATGTCGCAACCATTAGATATTGATAGCCATTTAGCTAAAAATGCTGGGCCGTTTGTGATTTTAATGGTGGGTA
TTAATGGTGTAGGTAAAACCACAACCATTGGTAAACTTGCTAAAAAGTATCAGCTAGAAGGTAAATCTGTGATGTTAGCC
GCTGGTGATACGTTTCGTGCCGCAGCGGTTGAACAGTTACAAACGTGGGGGGAACGCAACAATGTTCCAGTGATGGCACA
AAAAACAGGTGCAGATTCTGCCGCAGTTATTTTTGATGCCATACAATCTGCCAAAGCCAAAAAAATTGATATCTTAATTG
CCGATACGGCTGGCCGTTTACATACTCAATCTAACTTAATGGAAGAGCTAAAAAAAGTAAAACGCGTTATTGCTAAAGTA
GATGAAACCGCACCGCATGAAGTGATGTTAGTGATTGATGCTGGAACAGGACAAAACGCACTTAACCAAGCTCAACAATT
TCAAGAAGCGGTAAACGTTTCTGGAATTACCTTAACCAAGTTAGATGGAACAGCAAAAGGCGGTATTGTCTTTGCACTGG
CAGAGCAACGTCAAATTCCAATACGTTTTATTGGTGTCGGTGAATCAATTGATGATTTACGTAGCTTTGATAGCAAAAGT
TTTACCGAAGCTTTATTTGATCAATCCCAAAACAGTTAA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(38-102)

SRP54-type protein, GTPase domain (SRP54)

(126-326)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

55.14

96.687

0.533

Multiple sequence alignment