Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   ACKPCD_RS09535 Genome accession   NZ_OY759718
Coordinates   2004936..2006636 (-) Length   566 a.a.
NCBI ID   WP_321433047.1    Uniprot ID   -
Organism   MAG: Trichococcus flocculiformis isolate 659e37ff-3402-4023-a990-0c9469b16b9d     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1999936..2011636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKPCD_RS09515 (U2959_RS09505) - 2000674..2001930 (-) 1257 WP_321433045.1 methionine gamma-lyase family protein -
  ACKPCD_RS09520 (U2959_RS09510) hflX 2001914..2003173 (-) 1260 WP_276641309.1 GTPase HflX -
  ACKPCD_RS09525 (U2959_RS09515) miaA 2003212..2004126 (-) 915 WP_321434554.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  ACKPCD_RS09530 (U2959_RS09520) - 2004152..2004892 (-) 741 WP_321433046.1 glycerophosphodiester phosphodiesterase -
  ACKPCD_RS09535 (U2959_RS09525) recN 2004936..2006636 (-) 1701 WP_321433047.1 DNA repair protein RecN Machinery gene
  ACKPCD_RS09540 (U2959_RS09530) - 2006671..2007513 (-) 843 WP_086988073.1 TlyA family RNA methyltransferase -
  ACKPCD_RS09545 (U2959_RS09535) - 2007526..2008419 (-) 894 WP_086988074.1 polyprenyl synthetase family protein -
  ACKPCD_RS09550 (U2959_RS09540) - 2008425..2008670 (-) 246 WP_068559727.1 exodeoxyribonuclease VII small subunit -
  ACKPCD_RS09555 (U2959_RS09545) xseA 2008670..2010004 (-) 1335 WP_321433048.1 exodeoxyribonuclease VII large subunit -
  ACKPCD_RS09560 (U2959_RS09550) folD 2010021..2010860 (-) 840 WP_321433049.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -
  ACKPCD_RS09565 (U2959_RS09555) nusB 2010987..2011442 (-) 456 WP_068559734.1 transcription antitermination factor NusB -

Sequence

Protein


Download         Length: 566 a.a.        Molecular weight: 63268.09 Da        Isoelectric Point: 4.7487

>NTDB_id=1161432 ACKPCD_RS09535 WP_321433047.1 2004936..2006636(-) (recN) [MAG: Trichococcus flocculiformis isolate 659e37ff-3402-4023-a990-0c9469b16b9d]
MLQELSIKNFAIIENLQVSFDEGMTVLTGETGAGKSIIIDAVGLLAGGRGSNDLIRYGENKTVIQGLFSIPENAKTVSVL
ESYGIEADGNQVLLQRELSRNGKNISRVNGTIVTVATLREVGETLIDIHGQNEHQELMDPQKHIDLLDQFAGNELREVKT
TYLNTYAKYVDTRKQLIKLKTDEKETVQRIDLLTFQIQEIEQAQLKDAAEDEKLEEERNLLVNYQKVMQALTSAYDSMQN
SEENGIDKIGLGMAALEKVQDINPVYQAIASSVSAAYYQLQECAGDILSEIEQLSYDEGRLNEIENRLELIRQMKRKYGN
TISEVLGHYEKISQELDLIENRESYLEKLNVDYNKAKEEILAVGRQLTTIRKKAATVLEEQIQLQLKELYMDKVLFKTVF
HEQPGKVQITDNGLDQVEFYIATNVGEPLKALAKVASGGELSRMMLAMKAIFTKTQGITSIIFDEVDTGVSGRVAQAIAN
KIHLVAGYSQVLCITHLPQVAAMADQHLYIEKEIIADRTKTHVKSLFGAERINEVARMLAGTDITELSLAHAKELLELAN
TEKNKA

Nucleotide


Download         Length: 1701 bp        

>NTDB_id=1161432 ACKPCD_RS09535 WP_321433047.1 2004936..2006636(-) (recN) [MAG: Trichococcus flocculiformis isolate 659e37ff-3402-4023-a990-0c9469b16b9d]
ATGTTACAAGAGTTGTCCATTAAAAATTTTGCAATAATTGAAAATCTTCAAGTGAGTTTCGACGAGGGTATGACCGTGCT
GACTGGGGAAACCGGCGCAGGGAAATCCATCATCATCGATGCCGTAGGTCTGTTGGCAGGCGGAAGAGGATCCAACGATT
TGATTCGATACGGCGAAAACAAGACGGTCATCCAAGGGCTTTTCAGTATTCCCGAAAACGCTAAGACAGTTTCCGTGTTG
GAGTCATACGGAATCGAAGCAGACGGGAACCAAGTTTTGCTGCAGCGGGAACTTTCCCGAAACGGCAAAAACATTTCCCG
CGTCAACGGTACAATCGTGACAGTTGCGACTCTGCGTGAAGTAGGCGAAACGCTGATCGATATCCACGGGCAGAACGAGC
ATCAAGAATTGATGGATCCGCAAAAACATATCGACCTGCTGGATCAGTTTGCCGGGAATGAACTGAGAGAAGTCAAAACG
ACCTATCTCAATACTTATGCCAAATATGTGGATACACGCAAGCAACTGATCAAACTGAAGACGGACGAGAAAGAAACGGT
CCAAAGAATCGACTTGTTGACTTTCCAAATCCAGGAAATCGAACAAGCGCAGTTGAAAGATGCTGCAGAGGATGAAAAAT
TGGAAGAGGAGCGGAACTTGCTCGTCAACTACCAAAAAGTCATGCAGGCTTTAACGAGTGCGTACGATTCAATGCAGAAC
AGTGAAGAGAACGGCATCGACAAAATCGGTCTCGGCATGGCGGCGCTGGAAAAAGTGCAGGACATCAATCCGGTCTACCA
GGCAATCGCATCCTCGGTCTCGGCAGCGTATTACCAACTGCAGGAATGCGCAGGTGACATCCTGTCGGAGATCGAGCAAT
TGTCCTACGATGAAGGGCGCTTGAACGAAATCGAGAACCGATTGGAATTGATCCGCCAGATGAAGCGGAAATACGGAAAC
ACAATCAGTGAAGTGCTGGGGCATTACGAAAAAATTTCCCAAGAGCTGGATCTGATCGAAAACCGGGAAAGCTACCTTGA
GAAACTCAATGTGGACTACAACAAAGCAAAAGAAGAGATCTTGGCTGTCGGCAGACAATTGACCACTATCCGGAAGAAAG
CTGCAACCGTTCTGGAAGAACAGATCCAACTGCAGCTGAAGGAATTGTACATGGACAAGGTCCTTTTCAAGACGGTGTTC
CATGAACAACCAGGAAAGGTTCAAATCACTGATAACGGCTTGGATCAGGTGGAATTCTATATTGCGACGAATGTCGGCGA
ACCTTTAAAAGCATTGGCGAAGGTTGCCAGCGGTGGCGAACTTTCAAGGATGATGTTGGCGATGAAAGCCATTTTCACCA
AAACCCAAGGCATCACCAGTATCATCTTTGATGAAGTGGATACGGGTGTCTCGGGCAGGGTAGCGCAGGCGATAGCCAAT
AAGATCCACTTGGTGGCTGGTTACTCACAAGTGCTTTGCATCACGCATCTACCGCAAGTGGCGGCGATGGCGGATCAGCA
CCTTTATATAGAAAAGGAAATCATTGCCGATCGGACAAAGACGCATGTCAAGTCGCTGTTCGGTGCTGAACGCATCAACG
AAGTGGCGCGGATGTTGGCAGGTACCGATATCACGGAACTTTCGCTGGCTCATGCGAAAGAATTGCTTGAGTTGGCCAAT
ACCGAAAAAAACAAAGCGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

49.301

100

0.498

Multiple sequence alignment