Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ACKPCD_RS06835 Genome accession   NZ_OY759718
Coordinates   1412668..1414485 (+) Length   605 a.a.
NCBI ID   WP_288925891.1    Uniprot ID   -
Organism   MAG: Trichococcus flocculiformis isolate 659e37ff-3402-4023-a990-0c9469b16b9d     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1407668..1419485
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKPCD_RS06815 (U2959_RS06800) trpS 1408689..1409681 (-) 993 WP_086988312.1 tryptophan--tRNA ligase -
  ACKPCD_RS06820 (U2959_RS06805) spxA 1410070..1410468 (+) 399 WP_068559948.1 transcriptional regulator SpxA -
  ACKPCD_RS06825 (U2959_RS06810) - 1410663..1411325 (+) 663 WP_321434459.1 adaptor protein MecA -
  ACKPCD_RS06830 (U2959_RS06815) - 1411418..1412584 (+) 1167 WP_321434460.1 competence protein CoiA family protein -
  ACKPCD_RS06835 (U2959_RS06820) pepF 1412668..1414485 (+) 1818 WP_288925891.1 oligoendopeptidase F Regulator
  ACKPCD_RS06840 (U2959_RS06825) - 1414563..1415261 (-) 699 WP_321434461.1 DsbA family protein -
  ACKPCD_RS06845 (U2959_RS06830) - 1415628..1416221 (-) 594 WP_321434462.1 CYTH domain-containing protein -
  ACKPCD_RS06850 (U2959_RS06835) - 1416514..1417155 (+) 642 WP_276646060.1 GTP pyrophosphokinase family protein -
  ACKPCD_RS06855 (U2959_RS06840) - 1417179..1418009 (+) 831 WP_086988318.1 NAD kinase -
  ACKPCD_RS06860 (U2959_RS06845) - 1418012..1418965 (+) 954 WP_321434463.1 NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 68915.46 Da        Isoelectric Point: 4.6295

>NTDB_id=1161419 ACKPCD_RS06835 WP_288925891.1 1412668..1414485(+) (pepF) [MAG: Trichococcus flocculiformis isolate 659e37ff-3402-4023-a990-0c9469b16b9d]
MTNTEKHLKRAEVPEASTWDLTAIFPTDAAFEKELDELAGAVPFIRALQGTIGSSSQALLKGIEEVLEINQKLERVYVYS
HLKNDQDTADSLYQNLHDKALSILTSVSEATSWFEPEIMEIPEDELEKYLAENDKLKPYAHLLDSLTSAREHVLTAREEE
LLAGAGEIFAAPSKTFSVLNNADMTFPKVKNEEGQEVQLTHGLYGKLMESPDREVREGAFKALYKTYDGLKNTFATTLST
NVKAHNYKAKVHKYESARAAALANNHIPESVYDTLLDVVNEHLPLLHRYVDLRKDLLGVEELHMYDMYTPLTGEAPIKYS
IEAAMEETLKGLQPLGEDYLAILQEAFDNRWIDWLENEGKRSGAYSSGAYDTNPYILMNWQDSLNQLYTLVHELGHSVHS
YLTRKNQPYVYGDYSIFLAEIASTTNENILTDYLLKTQTDPKVRIYILNHYLDGFKGTIFRQTQFAEFEHYIHQKALEGV
PLTQDFMTSYYAELNAKYYGPSVEKDPEIGIEWTRIPHFYYNYYVYQYATGFSAATALAKRIVEGEEGALEKYLSYLKAG
NSDYPIEVMKKAGVDMTQSAYIEDAMKVFEERLNELEQLIAAQQA

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=1161419 ACKPCD_RS06835 WP_288925891.1 1412668..1414485(+) (pepF) [MAG: Trichococcus flocculiformis isolate 659e37ff-3402-4023-a990-0c9469b16b9d]
ATGACAAACACAGAGAAACATTTAAAGAGAGCGGAAGTCCCTGAGGCTTCCACGTGGGATTTGACAGCGATCTTTCCGAC
GGATGCAGCTTTCGAGAAAGAGTTGGATGAATTAGCGGGAGCGGTTCCTTTCATACGGGCTTTGCAGGGAACCATCGGCT
CGAGCAGTCAAGCTCTATTGAAAGGGATTGAAGAAGTCCTCGAAATCAATCAAAAGTTGGAACGGGTCTATGTCTATTCC
CATCTGAAGAATGATCAGGATACGGCGGACAGTCTGTATCAGAATTTGCACGATAAAGCCTTGTCGATTTTGACGAGCGT
CAGTGAAGCTACCTCTTGGTTCGAGCCAGAAATCATGGAGATTCCGGAGGATGAACTGGAGAAGTACTTAGCAGAAAACG
ATAAGCTGAAACCTTACGCGCATTTATTGGATAGCCTTACCTCTGCTCGTGAGCACGTCCTTACCGCCAGAGAAGAAGAG
TTATTGGCGGGTGCGGGAGAAATTTTTGCTGCGCCAAGCAAGACTTTTTCCGTTCTCAATAATGCTGACATGACATTCCC
GAAAGTGAAAAATGAAGAGGGCCAGGAGGTCCAATTGACTCATGGTTTGTATGGAAAGTTGATGGAAAGCCCGGATCGGG
AAGTCCGTGAAGGAGCCTTCAAAGCACTATACAAGACATATGATGGTCTGAAAAATACGTTTGCGACTACCTTATCGACT
AACGTGAAGGCGCACAATTACAAAGCCAAAGTACATAAATATGAATCCGCCCGTGCAGCCGCTCTGGCGAATAATCACAT
TCCGGAATCGGTTTATGACACGTTGTTGGATGTGGTGAATGAACATCTACCTTTGTTGCATCGCTATGTGGACTTGCGTA
AAGACTTGTTGGGGGTCGAGGAGTTGCATATGTACGATATGTATACGCCATTGACAGGGGAAGCCCCAATCAAATACAGC
ATCGAGGCGGCGATGGAAGAAACCTTGAAAGGTCTTCAGCCGCTTGGAGAGGACTATTTGGCTATCCTCCAAGAAGCATT
TGACAACCGTTGGATCGACTGGCTTGAGAATGAGGGGAAACGCAGCGGAGCTTATTCTTCCGGTGCCTACGACACGAATC
CGTATATCCTGATGAATTGGCAAGATTCGTTGAATCAATTGTATACATTGGTCCATGAATTGGGACACAGCGTGCACAGC
TATCTGACAAGAAAGAACCAGCCTTATGTGTACGGAGATTATTCGATTTTCCTGGCCGAAATCGCTTCGACAACGAATGA
AAATATTTTGACCGATTATTTGTTGAAGACGCAAACCGATCCTAAAGTCCGCATCTATATTTTGAATCATTACCTGGATG
GTTTCAAAGGAACGATATTCCGCCAAACCCAATTTGCCGAATTTGAGCACTATATCCATCAGAAAGCCTTGGAAGGTGTT
CCGTTGACGCAAGATTTCATGACTTCTTATTATGCGGAATTGAATGCCAAGTATTATGGTCCGAGCGTCGAAAAGGATCC
TGAAATCGGCATCGAATGGACCCGTATTCCGCATTTCTACTATAATTATTACGTCTACCAATACGCTACCGGCTTTTCGG
CTGCGACGGCATTGGCTAAACGCATCGTGGAGGGTGAAGAGGGCGCGTTAGAGAAGTACCTTTCCTATCTGAAAGCAGGA
AACAGCGACTATCCGATTGAAGTTATGAAAAAAGCAGGCGTGGACATGACTCAGTCAGCTTACATCGAGGATGCTATGAA
AGTGTTCGAGGAACGTCTGAATGAACTCGAACAATTGATTGCAGCGCAACAGGCTTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(207-587)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

54.822

97.686

0.536

Multiple sequence alignment