Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACKPCD_RS01940 Genome accession   NZ_OY759718
Coordinates   336318..337700 (-) Length   460 a.a.
NCBI ID   WP_276647866.1    Uniprot ID   A0A847D810
Organism   MAG: Trichococcus flocculiformis isolate 659e37ff-3402-4023-a990-0c9469b16b9d     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 331318..342700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKPCD_RS01920 (U2959_RS01910) cysS 331593..333005 (-) 1413 WP_321433845.1 cysteine--tRNA ligase -
  ACKPCD_RS01925 (U2959_RS01915) epsC 333061..333600 (-) 540 WP_086989687.1 serine O-acetyltransferase EpsC -
  ACKPCD_RS01930 (U2959_RS01920) gltX 333679..335148 (-) 1470 WP_086989685.1 glutamate--tRNA ligase -
  ACKPCD_RS01935 (U2959_RS01925) - 335197..336291 (-) 1095 WP_276647863.1 PIN/TRAM domain-containing protein -
  ACKPCD_RS01940 (U2959_RS01930) radA 336318..337700 (-) 1383 WP_276647866.1 DNA repair protein RadA Machinery gene
  ACKPCD_RS01945 (U2959_RS01935) - 337804..338349 (-) 546 WP_321433846.1 dUTP diphosphatase -
  ACKPCD_RS01950 (U2959_RS01940) - 338630..339739 (+) 1110 WP_321433847.1 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC -
  ACKPCD_RS01955 (U2959_RS01945) - 340052..341551 (-) 1500 WP_321434526.1 alpha-amylase -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 50661.01 Da        Isoelectric Point: 7.1210

>NTDB_id=1161412 ACKPCD_RS01940 WP_276647866.1 336318..337700(-) (radA) [MAG: Trichococcus flocculiformis isolate 659e37ff-3402-4023-a990-0c9469b16b9d]
MAKKNAVKYVCQACGYESPKWLGRCPNCNTWNQMEEEKEATKAVKQQQRSNFSGNVPEAIAIQDIKTENLPRVKTQMEEV
NHVLGGGIVPGSLILIGGDPGIGKSTLLLQVSAQINQGGHRVLYISGEESASQIKLRAERLGVKGTDFYIYPETDIDAIR
NTIERIKPEFVIVDSIQTMIHPDNTSTAGSVSQVRECTAEFMRIAKSNDIAIFIVGHVTKEGAIAGPRMLEHMVDTVLYF
EGDRHHAFRILRAVKNRFGSTDEIGVFEMIEGGLREVRNPSELFLEERLAGASGSAVVASLEGTRPILAEIQCLITPTVF
GNARRTASGLDYNRVSLIMAVLEKRAGLLLQNQDAYFKSTGGVKLDEPAIDLAVAVSIASSYWDSETSATECFIGEIGLT
GEIRRVSRIEQRVNEAEKLGFTKVYLPKNNMAGWKHPKGIQIIPVATLQETLRKVFPNKN

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=1161412 ACKPCD_RS01940 WP_276647866.1 336318..337700(-) (radA) [MAG: Trichococcus flocculiformis isolate 659e37ff-3402-4023-a990-0c9469b16b9d]
TTGGCAAAGAAAAATGCAGTGAAATACGTTTGTCAGGCTTGCGGATACGAGTCGCCGAAATGGCTGGGACGTTGCCCGAA
CTGCAACACTTGGAACCAAATGGAGGAAGAAAAGGAAGCGACGAAAGCCGTGAAGCAACAGCAGCGTTCCAATTTCAGCG
GGAACGTACCTGAAGCGATCGCCATCCAGGACATCAAGACCGAAAACCTGCCGCGTGTCAAAACGCAGATGGAAGAAGTC
AACCATGTGCTGGGCGGCGGCATCGTGCCCGGTTCGTTGATTCTGATCGGGGGCGACCCGGGAATCGGCAAGTCCACCTT
GCTGCTGCAGGTTTCTGCGCAGATCAATCAAGGCGGTCACCGCGTTCTGTACATCTCCGGAGAGGAAAGCGCGAGTCAGA
TCAAGTTGCGGGCGGAACGGCTAGGGGTCAAGGGCACCGACTTCTACATCTACCCGGAAACGGATATCGACGCGATCCGA
AACACGATCGAGCGGATCAAGCCGGAATTCGTCATCGTCGACTCGATCCAGACGATGATCCATCCGGACAACACGAGCAC
GGCCGGCAGCGTGTCGCAAGTGCGCGAATGCACGGCCGAATTCATGCGGATCGCGAAGAGCAACGACATCGCGATCTTCA
TCGTCGGGCATGTGACGAAGGAAGGCGCGATTGCCGGTCCACGGATGCTGGAGCACATGGTGGATACGGTGCTGTATTTT
GAAGGCGATCGGCATCATGCTTTCCGGATCTTGCGCGCCGTCAAAAATCGCTTCGGATCGACCGACGAAATCGGCGTTTT
CGAAATGATCGAGGGCGGTTTGCGTGAGGTGCGGAATCCTTCCGAGCTGTTCCTGGAAGAACGGCTTGCCGGAGCATCCG
GTTCAGCAGTCGTTGCCTCACTCGAGGGCACGCGTCCGATTTTGGCCGAAATCCAGTGTCTGATTACGCCGACAGTCTTC
GGGAATGCCCGCCGGACTGCAAGCGGCTTGGACTACAACCGGGTTTCGCTGATCATGGCCGTGCTGGAAAAGCGGGCGGG
CTTGCTGCTGCAGAACCAGGATGCCTACTTCAAATCGACAGGTGGCGTGAAGCTGGATGAGCCGGCCATCGACCTGGCAG
TAGCCGTCAGCATCGCCTCCAGTTATTGGGATAGTGAGACTTCCGCGACCGAGTGTTTTATCGGTGAAATCGGCCTGACC
GGGGAAATCCGACGGGTGAGCCGGATCGAGCAACGCGTCAACGAAGCTGAAAAATTGGGCTTCACGAAGGTGTATCTGCC
GAAGAACAATATGGCTGGCTGGAAGCACCCGAAAGGGATCCAGATCATTCCTGTCGCAACGCTTCAAGAAACGCTGCGCA
AAGTATTTCCGAATAAAAATTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(71-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(367-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A847D810

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

67.325

99.13

0.667
  radA Streptococcus pneumoniae Rx1

67.325

99.13

0.667
  radA Streptococcus pneumoniae D39

67.325

99.13

0.667
  radA Streptococcus pneumoniae R6

67.325

99.13

0.667
  radA Streptococcus pneumoniae TIGR4

67.325

99.13

0.667
  radA Streptococcus mitis SK321

67.105

99.13

0.665
  radA Bacillus subtilis subsp. subtilis str. 168

64.474

99.13

0.639

Multiple sequence alignment