Detailed information NTG1161380

Bioinformatically predicted

Overview

• Name: waaF
• Type: Regulator
• Locus tag: AABJ57_RS06760
• Genome accession: NZ_OY754859
• Coordinates: 1252386..1253330 (-)
• Length: 314 a.a.
• NCBI ID: WP_338371222.1
• Uniprot ID: -
• Organism: Campylobacter coli isolate Reference
• Function: repress natural transformation (predicted from homology) Competence regulation

Genomic Context

Location: 1247386..1258330

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AABJ57_RS06725	-	1247579..1247779 (+)	201	WP_002777240.1	cbb3-type cytochrome oxidase assembly protein	-
AABJ57_RS06730	-	1247809..1248108 (-)	300	WP_002777238.1	cytochrome c	-
AABJ57_RS06735	-	1248185..1248742 (+)	558	Protein_1307	HAD family hydrolase	-
AABJ57_RS06740	rfaD	1248744..1249697 (+)	954	WP_002831601.1	ADP-glyceromanno-heptose 6-epimerase	-
AABJ57_RS06745	rfaE1	1249690..1251075 (+)	1386	WP_002831599.1	D-glycero-beta-D-manno-heptose-7-phosphate kinase	-
AABJ57_RS06750	gmhA	1251072..1251632 (+)	561	WP_002777232.1	D-sedoheptulose 7-phosphate isomerase	-
AABJ57_RS06755	-	1251632..1252393 (+)	762	WP_002777231.1	glycosyltransferase family 25 protein	-
AABJ57_RS06760	waaF	1252386..1253330 (-)	945	WP_338371222.1	lipopolysaccharide heptosyltransferase II	Regulator
AABJ57_RS06765	-	1253390..1254211 (+)	822	WP_002844798.1	glycosyltransferase family 2 protein	-
AABJ57_RS06770	-	1254254..1255621 (+)	1368	WP_002844799.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
AABJ57_RS06775	gmd	1255622..1256761 (+)	1140	WP_338371224.1	GDP-mannose 4,6-dehydratase	-
AABJ57_RS06780	-	1256754..1257692 (+)	939	WP_002844801.1	NAD-dependent epimerase/dehydratase family protein	-

Sequence

Protein

• Length: 314 a.a.
• Molecular weight: 36083.62 Da
• Isoelectric Point: 10.2944

>NTDB_id=1161380 AABJ57_RS06760 WP_338371222.1 1252386..1253330(-) (waaF) [Campylobacter coli isolate Reference]
MKIFIHLPTWLGDAVMASPALYGVYHHFKNAEFILYGSFVSTALFKEFPNAKIIVENKKSRYKQTLSLRKKLGKIDLALS
FRSALSSKIILHILKVKQRYFFNKYDFKEEHQVLKYLYFIENSLEIKAHSKDLKLPFKLKFQNPIVLKNGKKILGLNPGA
SFGSAKRWDASYFAQVALNFSKTHEILIFGAGKAEQELCDEIFHILKEKNVKVKNLCNKTTIKTLCQNIVFCDIFITNDS
GPMHIAAAYKTKTIAIFGPTKFTQTSPWQNQNAKLVHLNLSCMPCMQKTCPLKHHRCMKDLKPEKILEAIQNFT

Nucleotide

• Length: 945 bp

>NTDB_id=1161380 AABJ57_RS06760 WP_338371222.1 1252386..1253330(-) (waaF) [Campylobacter coli isolate Reference]
ATGAAAATTTTTATCCATCTTCCCACTTGGCTAGGCGATGCAGTCATGGCCTCACCTGCTTTATATGGAGTTTATCATCA
TTTTAAAAATGCTGAATTTATCCTTTATGGATCTTTTGTATCTACAGCGCTTTTTAAGGAATTTCCTAATGCTAAAATCA
TTGTAGAAAATAAAAAATCACGCTACAAACAAACCCTTTCTTTACGCAAAAAACTTGGAAAAATCGATCTAGCCCTTTCT
TTTAGATCAGCCCTTTCCTCTAAGATCATTTTACACATCCTTAAGGTAAAACAAAGATATTTTTTTAACAAATATGATTT
TAAAGAAGAACATCAGGTTTTAAAATATCTTTATTTTATAGAAAATTCATTAGAAATTAAAGCTCATTCTAAGGATTTAA
AACTTCCTTTTAAATTAAAATTTCAAAATCCTATTGTTTTAAAAAATGGCAAAAAAATCCTAGGATTAAACCCTGGAGCG
AGTTTTGGAAGTGCTAAAAGATGGGATGCGAGCTATTTTGCACAAGTTGCTTTAAATTTTAGCAAAACTCATGAAATTTT
GATTTTTGGAGCAGGTAAAGCAGAACAAGAACTTTGCGATGAAATTTTTCATATACTAAAAGAAAAAAATGTCAAAGTAA
AAAATCTTTGCAATAAAACCACTATCAAAACCCTTTGTCAAAATATCGTTTTTTGTGATATTTTCATCACAAACGATAGC
GGCCCTATGCACATAGCTGCCGCTTATAAAACAAAAACCATAGCTATTTTTGGGCCTACTAAATTTACCCAAACCTCACC
TTGGCAAAATCAAAATGCAAAATTAGTACATCTAAATTTATCTTGCATGCCTTGCATGCAAAAAACCTGTCCTTTAAAAC
ATCATCGGTGCATGAAAGATTTAAAACCGGAAAAAATTTTAGAAGCAATCCAAAATTTTACTTAA

Domains

Predicted by InterproScan.

• Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9) (106-294)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
waaF	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	83.387	99.682	0.831