Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   DEHRE_RS04985 Genome accession   NZ_CP007033
Coordinates   1052590..1053516 (+) Length   308 a.a.
NCBI ID   WP_025205370.1    Uniprot ID   -
Organism   Dehalobacter restrictus DSM 9455 strain PER-K23     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1047590..1058516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DEHRE_RS04975 (DEHRE_05250) rnc 1047717..1048463 (+) 747 WP_019225653.1 ribonuclease III -
  DEHRE_RS04980 (DEHRE_05255) smc 1048468..1052061 (+) 3594 WP_025205369.1 chromosome segregation protein SMC -
  DEHRE_RS04985 (DEHRE_05260) pilA 1052590..1053516 (+) 927 WP_025205370.1 signal recognition particle-docking protein FtsY Machinery gene
  DEHRE_RS04990 (DEHRE_05265) mtnP 1053519..1054301 (+) 783 WP_019225650.1 S-methyl-5'-thioadenosine phosphorylase -
  DEHRE_RS04995 (DEHRE_05270) mtnA 1054345..1055379 (+) 1035 WP_019225649.1 S-methyl-5-thioribose-1-phosphate isomerase -
  DEHRE_RS05000 (DEHRE_05275) - 1055494..1056792 (+) 1299 WP_019225648.1 amidohydrolase -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 33500.41 Da        Isoelectric Point: 5.0620

>NTDB_id=116138 DEHRE_RS04985 WP_025205370.1 1052590..1053516(+) (pilA) [Dehalobacter restrictus DSM 9455 strain PER-K23]
MAGIFSRLKERLTKTREGFVGKVEQLFTGSGKIDEDLYEELEEILLQSDVGVNTTLKLVGMLRASVKEQKINDRSGLRDV
LQEHITALLGEEIPLSFADSKPTVYLIVGVNGVGKTTTIGKLAKNLQGQGKNVLLAAGDTFRAAAIEQLEVWGERSGTEV
IKQSEGADPAAVAFDALHAARSRNTDVLLIDTAGRLHNKVNLMKELTKIKKVVEREVPDAPHEVLLVLDATTGQNAIQQV
KLFKEAVDVTGIILTKLDGTAKGGVILGIRNEADIPVKLIGIGEGAEDLRPFEPREFARALFDRSEEE

Nucleotide


Download         Length: 927 bp        

>NTDB_id=116138 DEHRE_RS04985 WP_025205370.1 1052590..1053516(+) (pilA) [Dehalobacter restrictus DSM 9455 strain PER-K23]
GTGGCAGGAATATTTTCCAGACTTAAAGAGCGCCTGACCAAAACCAGAGAAGGTTTTGTCGGCAAAGTTGAACAGCTTTT
TACCGGCTCAGGCAAAATTGATGAAGATCTTTATGAAGAATTGGAAGAGATTCTACTTCAATCAGATGTGGGTGTCAATA
CAACGCTGAAATTGGTTGGAATGCTGCGTGCATCCGTCAAAGAACAAAAAATTAACGACCGCTCCGGGCTGAGGGATGTA
CTGCAGGAACATATTACTGCGCTATTGGGTGAAGAGATTCCCTTGTCTTTTGCAGATTCCAAGCCCACCGTCTATCTGAT
CGTTGGTGTCAACGGTGTAGGAAAAACGACCACGATCGGCAAGCTGGCCAAAAATCTGCAGGGCCAGGGTAAAAATGTTT
TGCTGGCGGCAGGGGATACTTTCCGAGCAGCAGCGATCGAGCAATTGGAAGTATGGGGAGAACGGTCCGGGACAGAGGTC
ATCAAACAGTCGGAGGGGGCTGATCCTGCTGCGGTGGCTTTCGATGCACTTCATGCGGCAAGATCCCGGAATACAGATGT
CCTATTGATCGATACTGCCGGAAGACTGCACAATAAAGTGAATCTGATGAAAGAATTGACCAAGATCAAAAAGGTGGTCG
AGCGCGAAGTTCCGGATGCCCCGCACGAGGTGCTGCTGGTACTCGATGCGACGACCGGACAGAACGCCATCCAGCAGGTG
AAACTGTTCAAGGAAGCAGTCGATGTGACAGGAATCATACTCACCAAGTTGGACGGCACAGCTAAAGGCGGTGTAATCCT
GGGGATCCGGAATGAAGCGGATATCCCGGTAAAATTGATTGGAATCGGTGAAGGGGCAGAAGATTTAAGGCCTTTTGAAC
CGAGAGAATTTGCCAGGGCCTTGTTTGACCGTTCTGAGGAGGAATAG

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(102-302)

SRP54-type protein, helical bundle domain (SRP54_N)

(20-83)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

49.505

98.377

0.487

Multiple sequence alignment