Detailed information NTG1161371

Bioinformatically predicted

Overview

• Name: ctsF
• Type: Machinery gene
• Locus tag: AABJ57_RS04780
• Genome accession: NZ_OY754859
• Coordinates: 876776..877951 (+)
• Length: 391 a.a.
• NCBI ID: WP_002781160.1
• Uniprot ID: A0A0Q2ISE7
• Organism: Campylobacter coli isolate Reference
• Function: type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 871776..882951

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AABJ57_RS04755	ctsR	872345..872656 (+)	312	WP_002779316.1	hypothetical protein	Machinery gene
AABJ57_RS04760	ctsD	872634..874052 (+)	1419	WP_002779315.1	pilus (MSHA type) biogenesis protein MshL	Machinery gene
AABJ57_RS04765	ctsP	874045..874641 (+)	597	WP_002779314.1	ATP-binding protein	Machinery gene
AABJ57_RS04770	-	874638..875234 (+)	597	WP_002779313.1	CDC27 family protein	-
AABJ57_RS04775	ctsE	875227..876789 (+)	1563	WP_002779312.1	GspE/PulE family protein	Machinery gene
AABJ57_RS04780	ctsF	876776..877951 (+)	1176	WP_002781160.1	type II secretion system F family protein	Machinery gene
AABJ57_RS04785	-	877948..878712 (-)	765	WP_002784060.1	TSUP family transporter	-
AABJ57_RS04790	-	878715..879479 (-)	765	WP_002781156.1	TIGR02757 family protein	-
AABJ57_RS04795	flgK	879496..881322 (-)	1827	WP_002779264.1	flagellar hook-associated protein FlgK	-
AABJ57_RS04800	-	881332..881766 (-)	435	WP_002779263.1	flagellar protein FlgN	-
AABJ57_RS04805	flgM	881809..882006 (-)	198	WP_002779262.1	flagellar biosynthesis anti-sigma factor FlgM	-
AABJ57_RS04810	-	882069..882410 (-)	342	WP_002779261.1	hypothetical protein	-

Sequence

Protein

• Length: 391 a.a.
• Molecular weight: 45518.35 Da
• Isoelectric Point: 9.4461

>NTDB_id=1161371 AABJ57_RS04780 WP_002781160.1 876776..877951(+) (ctsF) [Campylobacter coli isolate Reference]
MKLYELEIKGKTKQTKHLRAKNLNEAQAKAIAKKWEILNIKEIQKASFKRLDDARFILFFQELSLLCEVGISIKDALKEL
DKIYSHKMIAKLCDNLNLGQNLSLAFENANFGLTHAELALIKTSQNTGKLSEIFMQISRLRQNNVENEQRVKKALRYPLI
VFLSVCAAFVLLMLFVVPNFKDLFEDLNLALPFITELIIYIYNFLDKYILLVFCLIALILFLTLFLYRKYYFFSYFCDSL
LLKLPLLSKFIIYQQNYSFFMIFSLLLKSGISLLEAFKLATLALNNKKVLLYYQEIRTFMDSGLEISHAFKKVDLFDPLV
FSMLSIAMKSSKLEFLSEEIAKYYKNKSENLMDKFLSFLEPIMTLWVAILVLFLALGIFLPIWELSSGVNF

Nucleotide

• Length: 1176 bp

>NTDB_id=1161371 AABJ57_RS04780 WP_002781160.1 876776..877951(+) (ctsF) [Campylobacter coli isolate Reference]
ATGAAGCTTTATGAGCTCGAGATTAAAGGCAAAACAAAACAGACAAAGCATTTAAGGGCTAAAAATTTAAACGAAGCTCA
AGCAAAAGCTATCGCTAAAAAATGGGAAATTTTAAATATCAAAGAGATACAAAAAGCAAGTTTTAAAAGATTAGATGATG
CAAGATTTATCCTTTTCTTTCAAGAATTATCTTTGCTTTGCGAAGTAGGAATCAGCATAAAAGATGCTTTAAAGGAGCTT
GATAAAATATATTCTCACAAGATGATTGCCAAGCTTTGCGATAATTTAAATTTAGGACAAAATTTAAGCCTTGCTTTTGA
AAATGCAAATTTTGGGCTTACTCATGCGGAATTAGCCCTTATTAAAACTTCCCAAAACACAGGAAAATTAAGTGAAATTT
TCATGCAAATTTCAAGATTAAGACAAAATAATGTAGAAAATGAACAAAGAGTCAAAAAAGCTTTAAGATATCCTTTGATT
GTTTTTTTAAGTGTGTGCGCGGCTTTTGTTTTACTCATGCTTTTTGTTGTGCCTAATTTTAAAGATTTATTTGAGGATTT
AAATTTAGCCTTACCCTTTATAACCGAGCTTATAATTTATATTTATAATTTTTTGGATAAGTATATTTTGCTTGTGTTTT
GTTTGATCGCACTTATTTTATTTCTTACTTTATTTTTGTATAGAAAATATTATTTCTTTTCATATTTTTGCGATAGCTTG
CTTTTAAAACTTCCTTTGTTGTCTAAATTTATTATTTATCAGCAAAATTATTCTTTTTTTATGATTTTCTCTTTACTTTT
AAAAAGCGGCATTTCTCTTTTGGAAGCTTTTAAATTAGCCACTTTGGCCTTAAATAATAAAAAGGTATTATTGTATTATC
AAGAAATTAGAACATTTATGGATTCTGGCCTTGAAATAAGTCACGCCTTTAAAAAAGTAGATCTTTTTGATCCTTTGGTT
TTTTCTATGTTGAGTATAGCTATGAAAAGTTCTAAGCTTGAGTTTTTGAGCGAGGAGATTGCGAAATATTATAAAAACAA
AAGTGAAAATTTAATGGACAAGTTTTTAAGCTTTTTAGAACCTATAATGACTTTATGGGTTGCGATTTTAGTATTGTTTT
TAGCACTTGGAATTTTTTTACCTATATGGGAACTTAGCTCAGGAGTAAATTTTTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (262-381)

• Type II secretion system (T2SS), protein F (T2SSF) (59-178)

3D structure

• AlphaFold DB: A0A0Q2ISE7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ctsF	Campylobacter jejuni subsp. jejuni 81-176	60.66	100	0.611