Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DEHRE_RS02220 Genome accession   NZ_CP007033
Coordinates   468418..469758 (+) Length   446 a.a.
NCBI ID   WP_019225188.1    Uniprot ID   A0A1C2Y1Z7
Organism   Dehalobacter restrictus DSM 9455 strain PER-K23     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 463418..474758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DEHRE_RS02200 (DEHRE_02345) - 463813..464286 (+) 474 WP_019225184.1 CtsR family transcriptional regulator -
  DEHRE_RS02205 (DEHRE_02350) - 464301..464825 (+) 525 WP_019225185.1 UvrB/UvrC motif-containing protein -
  DEHRE_RS02210 (DEHRE_02355) - 464822..465889 (+) 1068 WP_019225186.1 protein arginine kinase -
  DEHRE_RS02215 (DEHRE_02360) - 465921..468404 (+) 2484 WP_019225187.1 ATP-dependent Clp protease ATP-binding subunit -
  DEHRE_RS02220 (DEHRE_02365) radA 468418..469758 (+) 1341 WP_019225188.1 DNA repair protein RadA Machinery gene
  DEHRE_RS02225 (DEHRE_02370) - 469912..470304 (-) 393 WP_019225189.1 hypothetical protein -
  DEHRE_RS02230 (DEHRE_02375) - 470575..471741 (+) 1167 WP_019225190.1 PIN/TRAM domain-containing protein -
  DEHRE_RS15455 (DEHRE_02380) ispD 471719..472906 (+) 1188 WP_019225191.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  DEHRE_RS02240 (DEHRE_02385) gltX 473014..474471 (+) 1458 WP_019225192.1 glutamate--tRNA ligase -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 48840.18 Da        Isoelectric Point: 5.6956

>NTDB_id=116136 DEHRE_RS02220 WP_019225188.1 468418..469758(+) (radA) [Dehalobacter restrictus DSM 9455 strain PER-K23]
MAGPKTKFYCRECGQESARWLGRCPGCGEWNTLIEERVEKSKPTEHRGIVQAIPLTEIQTMEGQRLDTGSPELNRVFGGG
VVEGSFVLLSGEPGIGKSTLFLQMAEYLSRKENVLYVSGEESARQIKLRADRMELSSSRVHILADNSLEAVRSEVLNKGY
KVVFIDSIQTMLLEDVQSAPGSVSQVREGASFLLKLAKENEITVFLAGHITKEGAIAGPRVLEHMVDTVLYFEGDQHHIF
RLLRAVKNRFGPANEIGVFEMRGCGLADVTNPSMFFMGDHTQVSAGSGVAVVMEGTRPLLVEVQALVTSSIFAPPRRTVN
GMDYHRLLMLLAVLDKRAGYAFGTRDVFVNIAGGLDVDEPAADLAVIASVMSGIKDQPLGNMALIGELGLTGEIRGVSHI
EQRIREAEKFGFQNCLVPKVNADSIGKTDCRIIPVKNIEEVLDFLF

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=116136 DEHRE_RS02220 WP_019225188.1 468418..469758(+) (radA) [Dehalobacter restrictus DSM 9455 strain PER-K23]
TTGGCAGGTCCGAAGACGAAGTTCTATTGCCGGGAATGCGGGCAGGAAAGCGCGAGATGGCTTGGAAGGTGTCCCGGATG
CGGTGAATGGAATACACTGATTGAGGAGCGCGTAGAAAAATCCAAACCTACAGAACACAGAGGGATCGTTCAGGCGATCC
CTCTGACTGAAATCCAAACGATGGAAGGGCAGAGACTTGATACCGGAAGTCCGGAACTTAACCGGGTTTTCGGGGGAGGG
GTTGTCGAAGGGTCCTTTGTTCTATTAAGCGGGGAGCCCGGGATTGGCAAATCCACTTTGTTTCTGCAAATGGCAGAATA
TCTTTCCCGGAAGGAAAATGTGCTTTATGTGTCGGGAGAGGAATCTGCCCGGCAAATCAAACTCAGGGCTGACAGAATGG
AGCTTTCTTCTTCCCGGGTACATATACTCGCCGATAATTCCCTGGAAGCAGTACGTTCGGAGGTGCTGAACAAAGGCTAT
AAAGTCGTTTTTATTGATTCGATCCAGACAATGCTGCTCGAAGACGTTCAGTCTGCACCCGGAAGCGTCAGCCAGGTAAG
GGAAGGGGCTTCTTTTTTGCTGAAACTGGCCAAAGAAAATGAGATTACGGTTTTCCTGGCCGGCCATATTACAAAGGAGG
GTGCGATTGCCGGACCCAGGGTTCTGGAGCACATGGTCGATACGGTCCTGTATTTTGAAGGAGATCAGCACCATATTTTC
CGTCTGCTGCGGGCAGTTAAAAACCGTTTTGGTCCGGCCAACGAAATTGGGGTATTTGAGATGAGAGGCTGCGGTCTAGC
TGATGTTACAAATCCCTCCATGTTTTTTATGGGCGATCATACACAGGTATCTGCTGGTTCCGGGGTGGCTGTCGTGATGG
AAGGAACAAGGCCGCTCTTAGTGGAAGTCCAGGCTTTGGTAACATCGTCCATCTTTGCGCCGCCGAGAAGAACCGTAAAC
GGGATGGATTACCACCGCCTGCTGATGCTTCTGGCAGTCCTGGACAAACGAGCCGGGTACGCTTTTGGCACCCGGGATGT
TTTTGTCAATATTGCCGGGGGTCTCGATGTGGATGAACCGGCAGCGGATCTTGCCGTTATTGCCTCTGTGATGTCGGGAA
TTAAAGATCAGCCGCTTGGAAATATGGCTTTAATCGGGGAACTCGGTTTGACCGGAGAAATTAGAGGGGTTTCTCATATT
GAGCAGCGGATCAGAGAAGCGGAAAAATTTGGTTTCCAAAATTGCCTGGTACCAAAAGTCAATGCAGACAGTATCGGGAA
GACCGATTGCCGAATCATTCCGGTTAAGAACATTGAGGAAGTACTGGATTTTCTTTTTTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(64-214)

Subunit ChlI of Mg-chelatase (ChlI)

(337-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C2Y1Z7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.552

100

0.513
  radA Streptococcus mitis NCTC 12261

48.59

100

0.502
  radA Streptococcus pneumoniae Rx1

48.59

100

0.502
  radA Streptococcus pneumoniae D39

48.59

100

0.502
  radA Streptococcus pneumoniae R6

48.59

100

0.502
  radA Streptococcus pneumoniae TIGR4

48.59

100

0.502
  radA Streptococcus mitis SK321

48.59

100

0.502

Multiple sequence alignment