Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   DESME_RS14375 Genome accession   NZ_CP007032
Coordinates   2987679..2989523 (+) Length   614 a.a.
NCBI ID   WP_006716961.1    Uniprot ID   W0EGL4
Organism   Desulfitobacterium metallireducens DSM 15288     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2982679..2994523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DESME_RS14360 (DESME_14965) - 2983172..2984602 (-) 1431 WP_006716964.1 histidine kinase -
  DESME_RS14365 (DESME_14970) - 2984616..2985371 (-) 756 WP_006716963.1 exodeoxyribonuclease III -
  DESME_RS14370 (DESME_14975) - 2985569..2987686 (+) 2118 WP_006716962.1 ABC transporter ATP-binding protein -
  DESME_RS14375 (DESME_14980) rcrQ 2987679..2989523 (+) 1845 WP_006716961.1 ABC transporter ATP-binding protein Regulator
  DESME_RS14380 (DESME_14985) - 2989547..2989984 (+) 438 WP_006716960.1 MarR family transcriptional regulator -
  DESME_RS15495 (DESME_14990) - 2990046..2990639 (+) 594 WP_006716959.1 hypothetical protein -
  DESME_RS14390 (DESME_14995) - 2990679..2991284 (-) 606 WP_006716958.1 hypothetical protein -
  DESME_RS14395 (DESME_15000) - 2991296..2992171 (-) 876 WP_006716957.1 patatin family protein -
  DESME_RS14400 (DESME_15005) - 2992232..2993710 (-) 1479 WP_006716956.1 Lsa family ABC-F type ribosomal protection protein -

Sequence

Protein


Download         Length: 614 a.a.        Molecular weight: 68451.13 Da        Isoelectric Point: 5.9977

>NTDB_id=116130 DESME_RS14375 WP_006716961.1 2987679..2989523(+) (rcrQ) [Desulfitobacterium metallireducens DSM 15288]
MPNEEQAKRGPRFGGPMHGMGNVEKAKDFKGTLTKLAKYLGTYKLRLLGVLLCAIASTVFNIVGPKILGNATSQIFEGLI
AKIGGTGGIDFESITRLLLFLLSLYLISALFSMIQGWIMTAIANDVTYRLRKEISQKINRIPLKYFESRTFGEVLSRITN
DIDTLGQSLNQSLTQLITSVITLIGVIIMMLSISIPMTLVTFLILPLSAALIGSVMKYSQKYFRAQQKYLGEINGQVEEV
YSGLNIVKAYNQEEVFVKEFEQTNDKLYDSGWKAQVISGMMMPIMQFIGNLGYVAVAILGGYLAIKNAIRVGDIQAFIQY
VRSFTQPIQQLAQVTNMLQSTVAASERVFEFLEEAEEQQLTNNPASLEHLVGDVSFQHVAFGYNPEQLIIHDFSTDVKSG
QKVAIVGPTGAGKTTIVKLLMRFYDVNSGSIQLDGHDLRDFDRNELRNMFGMVLQDTWLFNGTIMENIRYGRLDASDEEV
IAAAKAAHAHHFIMTLPEGYNMMLNEESSNLSQGQKQLLTIARAILADNKILILDEATSSVDTRTEILIQKAMDHLMKDR
TSFVIAHRLSTIKNSDLILCMKDGDIIEQGTHDELILKDGFYANLYNSQFENAS

Nucleotide


Download         Length: 1845 bp        

>NTDB_id=116130 DESME_RS14375 WP_006716961.1 2987679..2989523(+) (rcrQ) [Desulfitobacterium metallireducens DSM 15288]
ATGCCTAATGAAGAACAAGCAAAACGCGGACCTAGGTTTGGTGGACCTATGCATGGTATGGGCAACGTTGAGAAGGCTAA
GGACTTTAAAGGAACCCTAACCAAGCTGGCAAAATACTTAGGGACTTATAAATTACGATTGCTTGGAGTGTTACTTTGCG
CCATTGCCAGCACCGTTTTTAATATCGTTGGTCCAAAAATTTTAGGAAATGCGACCAGTCAAATTTTTGAAGGTTTGATC
GCCAAAATCGGAGGAACAGGTGGCATCGACTTTGAAAGTATAACCCGCCTCCTTCTCTTCCTGCTCAGTCTCTATCTTAT
TAGTGCCCTATTCTCCATGATCCAAGGTTGGATCATGACCGCCATCGCCAATGATGTAACGTATCGTTTAAGGAAGGAAA
TCTCTCAAAAGATTAATCGCATCCCTTTAAAATATTTTGAGAGCCGAACCTTTGGTGAAGTCTTATCTCGCATAACGAAT
GATATCGATACACTGGGACAAAGCTTAAACCAAAGTTTAACTCAGTTAATCACCTCGGTCATTACCTTGATCGGCGTCAT
TATTATGATGCTGAGTATCAGTATCCCCATGACACTCGTCACTTTTCTTATTCTGCCCTTATCAGCAGCATTGATTGGTA
GCGTCATGAAGTATTCCCAAAAATACTTCCGTGCTCAGCAAAAATATTTAGGTGAAATTAATGGTCAGGTTGAAGAAGTT
TACTCCGGACTCAATATTGTCAAGGCTTATAATCAAGAAGAAGTTTTCGTCAAAGAGTTTGAGCAAACCAACGATAAACT
CTATGATTCCGGATGGAAAGCCCAAGTTATTTCCGGCATGATGATGCCGATCATGCAATTTATTGGGAATCTAGGGTATG
TCGCTGTTGCCATCCTGGGTGGGTACCTCGCCATCAAAAATGCGATTCGCGTCGGAGATATTCAAGCCTTTATCCAGTAT
GTCAGAAGTTTTACCCAGCCCATACAGCAGCTGGCCCAAGTCACCAATATGCTCCAATCGACCGTCGCTGCCTCGGAGCG
TGTCTTTGAGTTTTTAGAGGAAGCTGAAGAACAACAGTTAACGAATAATCCCGCTTCACTTGAACACTTAGTGGGCGACG
TCTCCTTTCAGCATGTCGCTTTCGGTTATAATCCAGAGCAGCTCATTATCCACGATTTCTCCACGGATGTAAAAAGTGGA
CAAAAAGTGGCGATCGTAGGCCCCACCGGCGCAGGTAAAACAACTATAGTCAAGCTGCTTATGCGCTTTTATGATGTCAA
CAGCGGCTCCATTCAGCTTGACGGTCATGACCTAAGAGATTTTGATCGCAATGAACTCAGAAATATGTTTGGAATGGTCC
TTCAAGACACTTGGCTCTTTAATGGCACGATCATGGAGAATATCCGTTATGGCCGGTTAGATGCCAGTGATGAAGAAGTT
ATCGCAGCCGCCAAAGCCGCTCACGCCCATCACTTCATTATGACTCTGCCCGAAGGCTATAACATGATGCTTAATGAAGA
AAGCAGTAACCTCTCTCAAGGTCAAAAACAGTTGCTGACTATTGCCCGAGCGATTCTTGCAGATAATAAGATCCTGATTC
TCGATGAAGCGACAAGCTCTGTAGATACCCGAACGGAGATCCTCATTCAAAAGGCGATGGACCATCTGATGAAGGACAGA
ACGAGCTTTGTCATCGCTCACCGACTCTCGACGATTAAAAATTCCGATTTGATTCTCTGTATGAAAGATGGAGATATCAT
CGAGCAAGGCACCCATGATGAATTAATATTAAAAGATGGCTTCTATGCGAATCTTTACAACAGCCAGTTTGAAAATGCAT
CTTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(391-539)

ABC transporter transmembrane region (ABC_membrane)

(49-327)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB W0EGL4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.807

94.625

0.49

Multiple sequence alignment