Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AABJ67_RS14105 Genome accession   NZ_OY754834
Coordinates   2896777..2897406 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli isolate Reference     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2891777..2902406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ67_RS14090 helD 2892019..2894073 (-) 2055 WP_000420533.1 DNA helicase IV -
  AABJ67_RS14095 yccF 2894196..2894642 (+) 447 WP_001261231.1 YccF domain-containing protein -
  AABJ67_RS14100 yccS 2894652..2896814 (+) 2163 WP_000875044.1 YccS family putative transporter -
  AABJ67_RS14105 sxy/tfoX 2896777..2897406 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AABJ67_RS14110 sulA 2897625..2898134 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  AABJ67_RS14115 ompA 2898491..2899543 (+) 1053 WP_000750419.1 porin OmpA -
  AABJ67_RS14120 matP 2899618..2900070 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  AABJ67_RS14125 ycbZ 2900256..2902016 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1161284 AABJ67_RS14105 WP_000839153.1 2896777..2897406(-) (sxy/tfoX) [Escherichia coli isolate Reference]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1161284 AABJ67_RS14105 WP_000839153.1 2896777..2897406(-) (sxy/tfoX) [Escherichia coli isolate Reference]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment