Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   R8822_RS13920 Genome accession   NZ_OY754443
Coordinates   2847392..2848021 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli isolate F829     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2842392..2853021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8822_RS13905 (FGAF829_26780) helD 2842634..2844688 (-) 2055 WP_317730799.1 DNA helicase IV -
  R8822_RS13910 (FGAF829_26790) yccF 2844811..2845257 (+) 447 WP_001261235.1 YccF domain-containing protein -
  R8822_RS13915 (FGAF829_26800) yccS 2845267..2847429 (+) 2163 WP_000875061.1 YccS family putative transporter -
  R8822_RS13920 (FGAF829_26810) sxy/tfoX 2847392..2848021 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  R8822_RS13925 (FGAF829_26820) sulA 2848240..2848749 (+) 510 WP_317730801.1 SOS-induced cell division inhibitor SulA -
  R8822_RS13930 (FGAF829_26830) ompA 2849106..2850146 (+) 1041 WP_001400178.1 porin OmpA -
  R8822_RS13935 (FGAF829_26840) matP 2850222..2850674 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  R8822_RS13940 (FGAF829_26850) ycbZ 2850860..2852620 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1161216 R8822_RS13920 WP_000839153.1 2847392..2848021(-) (sxy/tfoX) [Escherichia coli isolate F829]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1161216 R8822_RS13920 WP_000839153.1 2847392..2848021(-) (sxy/tfoX) [Escherichia coli isolate F829]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment