Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   R8830_RS15305 Genome accession   NZ_OY754421
Coordinates   3104502..3105131 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli isolate F344     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3099502..3110131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8830_RS15290 (FGAF344_29370) helD 3099744..3101798 (-) 2055 WP_000420538.1 DNA helicase IV -
  R8830_RS15295 (FGAF344_29380) yccF 3101921..3102367 (+) 447 WP_001261235.1 YccF domain-containing protein -
  R8830_RS15300 (FGAF344_29390) yccS 3102377..3104539 (+) 2163 WP_000875041.1 YccS family putative transporter -
  R8830_RS15305 (FGAF344_29400) sxy/tfoX 3104502..3105131 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  R8830_RS15310 (FGAF344_29410) sulA 3105350..3105859 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  R8830_RS15315 (FGAF344_29420) ompA 3106216..3107268 (+) 1053 WP_000750418.1 porin OmpA -
  R8830_RS15320 (FGAF344_29430) matP 3107343..3107795 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  R8830_RS15325 (FGAF344_29440) ycbZ 3107981..3109741 (+) 1761 WP_000156477.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1161172 R8830_RS15305 WP_000839153.1 3104502..3105131(-) (sxy/tfoX) [Escherichia coli isolate F344]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1161172 R8830_RS15305 WP_000839153.1 3104502..3105131(-) (sxy/tfoX) [Escherichia coli isolate F344]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment