Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   R8859_RS00355 Genome accession   NZ_OY754407
Coordinates   81656..82285 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli isolate F247     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 76656..87285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8859_RS00335 (FGAF247_00650) ycbZ 77046..78806 (-) 1761 WP_000156526.1 Lon protease family protein -
  R8859_RS00340 (FGAF247_00660) matP 78992..79444 (+) 453 WP_000877158.1 macrodomain Ter protein MatP -
  R8859_RS00345 (FGAF247_00670) ompA 79519..80571 (-) 1053 WP_000750419.1 porin OmpA -
  R8859_RS00350 (FGAF247_00680) sulA 80928..81437 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  R8859_RS00355 (FGAF247_00690) sxy/tfoX 81656..82285 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  R8859_RS00360 (FGAF247_00700) yccS 82248..84410 (-) 2163 WP_000875044.1 YccS family putative transporter -
  R8859_RS00365 (FGAF247_00710) yccF 84420..84866 (-) 447 WP_001261235.1 YccF domain-containing protein -
  R8859_RS00370 (FGAF247_00720) helD 84989..87043 (+) 2055 WP_001315388.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1161091 R8859_RS00355 WP_000839153.1 81656..82285(+) (sxy/tfoX) [Escherichia coli isolate F247]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1161091 R8859_RS00355 WP_000839153.1 81656..82285(+) (sxy/tfoX) [Escherichia coli isolate F247]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAGGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment