Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   RG37_RS16885 Genome accession   NZ_CP010143
Coordinates   3223112..3223627 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain D4     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3218112..3228627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG37_RS16860 (RG37_15845) ygaZ 3218511..3219248 (+) 738 WP_000445651.1 L-valine exporter subunit YgaZ -
  RG37_RS16865 (RG37_15850) ygaH 3219238..3219573 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  RG37_RS16870 (RG37_15855) emrR 3219664..3220194 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  RG37_RS16875 (RG37_15860) emrA 3220321..3221493 (+) 1173 WP_001326681.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  RG37_RS16880 (RG37_15865) emrB 3221510..3223048 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  RG37_RS16885 (RG37_15870) luxS 3223112..3223627 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  RG37_RS16890 (RG37_15875) gshA 3223777..3225333 (-) 1557 WP_000611804.1 glutamate--cysteine ligase -
  RG37_RS16895 (RG37_15880) yqaA 3225406..3225834 (-) 429 WP_001287454.1 YqaA family protein -
  RG37_RS16900 (RG37_15885) yqaB 3225831..3226397 (-) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  RG37_RS16930 (RG37_15920) csrA 3227855..3228040 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=116098 RG37_RS16885 WP_001130211.1 3223112..3223627(-) (luxS) [Escherichia coli strain D4]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=116098 RG37_RS16885 WP_001130211.1 3223112..3223627(-) (luxS) [Escherichia coli strain D4]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment