Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   R8837_RS00460 Genome accession   NZ_OY754371
Coordinates   95707..96336 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli isolate F374     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 90707..101336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8837_RS00440 (FGAF374_00890) ycbZ 91110..92870 (-) 1761 WP_000156482.1 Lon protease family protein -
  R8837_RS00445 (FGAF374_00900) matP 93056..93508 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  R8837_RS00450 (FGAF374_00910) ompA 93584..94624 (-) 1041 WP_001309394.1 porin OmpA -
  R8837_RS00455 (FGAF374_00920) sulA 94979..95488 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  R8837_RS00460 (FGAF374_00930) sxy/tfoX 95707..96336 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  R8837_RS00465 (FGAF374_00940) yccS 96299..98461 (-) 2163 WP_000875041.1 YccS family putative transporter -
  R8837_RS00470 (FGAF374_00950) yccF 98471..98917 (-) 447 WP_001261235.1 YccF domain-containing protein -
  R8837_RS00475 (FGAF374_00960) helD 99040..101094 (+) 2055 WP_001305911.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1160958 R8837_RS00460 WP_000839153.1 95707..96336(+) (sxy/tfoX) [Escherichia coli isolate F374]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1160958 R8837_RS00460 WP_000839153.1 95707..96336(+) (sxy/tfoX) [Escherichia coli isolate F374]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment