Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   ACI6PI_RS11470 Genome accession   NZ_OY737371
Coordinates   2357442..2359208 (-) Length   588 a.a.
NCBI ID   WP_404278397.1    Uniprot ID   -
Organism   Companilactobacillus paralimentarius strain IMDO BBRM18     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2352442..2364208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI6PI_RS11455 (CPBBRM18_IMEEAPEM_02289) - 2352701..2353432 (-) 732 WP_056955810.1 GntR family transcriptional regulator -
  ACI6PI_RS11460 (CPBBRM18_IMEEAPEM_02290) - 2353495..2355144 (-) 1650 WP_081784508.1 alpha,alpha-phosphotrehalase -
  ACI6PI_RS11465 (CPBBRM18_IMEEAPEM_02291) rcrQ 2355715..2357445 (-) 1731 WP_404278395.1 ABC transporter ATP-binding protein Regulator
  ACI6PI_RS11470 (CPBBRM18_IMEEAPEM_02292) rcrP 2357442..2359208 (-) 1767 WP_404278397.1 ABC transporter ATP-binding protein Regulator
  ACI6PI_RS11475 (CPBBRM18_IMEEAPEM_02293) - 2359254..2359718 (-) 465 WP_404278399.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACI6PI_RS11480 (CPBBRM18_IMEEAPEM_02294) - 2360233..2360916 (-) 684 WP_056955811.1 GTP pyrophosphokinase family protein -
  ACI6PI_RS11485 (CPBBRM18_IMEEAPEM_02295) - 2360990..2362426 (-) 1437 WP_056955812.1 MFS transporter -
  ACI6PI_RS11490 (CPBBRM18_IMEEAPEM_02296) - 2362497..2363027 (+) 531 WP_025085147.1 PadR family transcriptional regulator -
  ACI6PI_RS11495 (CPBBRM18_IMEEAPEM_02297) - 2363163..2363741 (-) 579 WP_025085148.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 588 a.a.        Molecular weight: 65359.77 Da        Isoelectric Point: 9.6271

>NTDB_id=1160818 ACI6PI_RS11470 WP_404278397.1 2357442..2359208(-) (rcrP) [Companilactobacillus paralimentarius strain IMDO BBRM18]
MIKLFKRINKKEYSMIFISLIFIVLQVGLELEIPSYMSTITERLEKQGTTINQILQPGMMMILLSIFSVIASIIVGYLAA
HVAAGFTARLRSQIFNQVMDYSTQDIKKFSVSSLLTRSTNDLTQLQQFIAMGLQVIIKAPITAIWAITKIANKGWQWTTA
TAVAVIVLIVMLTFILVMVQPKFKMVQSLTDRLNLVTRENLSGIRVVHAYNAEDYQNDKFNQANKDLTDTNLFANRVLAL
MNPGMSFISSTLTLSVYAIGAIIINQATASATRLTLFSNMIVFSSYAMQVILGFLLLSIIFILLPRVTVSVSRINQVLDV
KPSVVSEKETTEDVQQTGTLEFKDVSFRYPHAEADAIHNLSFAAQQGQTIAIIGSTGSGKSTVMNLIPRLYDVTQGQVLV
DGVDVKNYAIEDLNNRLGYIPQKAVLFSGSIRSNLDFGQTDITAKKSDQQLNQALEIAQSRDFVDQKRDQLDSKVAQHGD
NFSGGQKQRLAVARAIARKPEILLFDDSFSALDYETDKKLRKALKEKAAKTTKVIIAQRISTIMDAGQIIVLDNGNVAGQ
GTHRELLKNNQVYQEIAYSQLSKEELAE

Nucleotide


Download         Length: 1767 bp        

>NTDB_id=1160818 ACI6PI_RS11470 WP_404278397.1 2357442..2359208(-) (rcrP) [Companilactobacillus paralimentarius strain IMDO BBRM18]
ATGATAAAACTATTTAAAAGAATCAATAAAAAAGAATATTCAATGATTTTTATTAGTTTGATTTTTATCGTATTGCAAGT
TGGCTTGGAGCTGGAAATTCCTAGTTATATGTCGACTATTACGGAAAGACTAGAAAAGCAAGGAACGACGATCAATCAGA
TTTTACAGCCAGGAATGATGATGATTCTCTTATCAATTTTTAGTGTCATTGCTTCAATCATAGTCGGTTATTTGGCAGCT
CATGTGGCGGCAGGATTTACAGCTCGTTTGAGAAGCCAAATTTTCAATCAAGTTATGGATTACTCGACACAAGATATTAA
GAAATTTTCTGTTTCCAGTTTGTTGACACGTTCGACAAACGATTTGACGCAACTACAACAATTTATTGCCATGGGCTTAC
AGGTTATTATTAAAGCTCCAATTACAGCCATTTGGGCGATCACGAAGATTGCTAATAAAGGTTGGCAATGGACGACTGCC
ACAGCCGTAGCCGTTATTGTTTTGATCGTGATGTTAACGTTCATTTTGGTTATGGTTCAACCTAAATTTAAAATGGTTCA
GAGTTTAACTGATCGTTTGAATTTAGTTACTAGAGAAAATTTATCAGGTATCAGAGTTGTTCATGCTTACAACGCCGAAG
ATTACCAAAATGATAAATTCAATCAAGCTAATAAAGATTTAACTGATACCAACTTGTTTGCTAACCGAGTATTGGCTTTG
ATGAATCCCGGAATGAGTTTCATTTCCAGTACCCTAACACTTTCAGTTTATGCGATCGGTGCCATCATAATTAATCAAGC
AACCGCTAGTGCCACAAGATTGACATTGTTCAGTAATATGATTGTTTTCTCATCATATGCCATGCAAGTTATCTTAGGAT
TCTTGTTACTATCAATTATTTTCATTCTTTTACCACGTGTGACAGTTTCAGTATCCAGAATCAATCAGGTCCTAGACGTA
AAACCATCCGTTGTTAGTGAAAAGGAAACAACTGAAGATGTTCAACAGACAGGAACCTTAGAATTTAAAGATGTTAGTTT
TAGATATCCACATGCTGAAGCTGATGCGATTCACAATTTAAGCTTTGCGGCACAACAAGGACAAACGATTGCCATTATTG
GATCAACTGGTAGTGGTAAATCGACTGTTATGAATTTGATTCCTAGATTGTACGATGTTACTCAAGGACAAGTCTTGGTT
GATGGCGTAGATGTGAAAAATTATGCTATCGAAGACTTGAACAATCGTTTAGGGTATATTCCACAGAAAGCTGTTCTATT
TAGTGGTTCAATTCGTTCAAATCTTGATTTTGGACAAACCGATATTACTGCTAAAAAATCAGATCAACAGCTCAATCAAG
CTTTAGAGATTGCTCAATCACGTGATTTCGTCGATCAAAAACGAGATCAGCTTGATAGTAAGGTTGCACAACATGGTGAC
AACTTCTCCGGTGGTCAGAAACAACGTTTGGCTGTTGCTCGTGCTATTGCTAGAAAACCAGAAATTTTGCTTTTCGACGA
TTCCTTCTCGGCCTTAGATTATGAGACTGATAAGAAATTACGTAAGGCTTTAAAAGAAAAGGCTGCAAAAACAACAAAAG
TTATTATTGCTCAAAGAATCAGTACCATTATGGATGCCGGCCAAATTATTGTGCTTGATAACGGAAACGTTGCTGGACAA
GGGACACATCGTGAATTACTCAAGAATAATCAGGTTTATCAAGAGATTGCCTATTCACAATTGTCAAAGGAGGAATTAGC
TGAATGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(16-280)

ABC transporter (ABC_tran)

(358-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

55.444

100

0.563

Multiple sequence alignment