Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ACI6PI_RS11465 Genome accession   NZ_OY737371
Coordinates   2355715..2357445 (-) Length   576 a.a.
NCBI ID   WP_404278395.1    Uniprot ID   -
Organism   Companilactobacillus paralimentarius strain IMDO BBRM18     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2350715..2362445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI6PI_RS11450 (CPBBRM18_IMEEAPEM_02288) - 2351928..2352650 (+) 723 WP_404278393.1 GntR family transcriptional regulator -
  ACI6PI_RS11455 (CPBBRM18_IMEEAPEM_02289) - 2352701..2353432 (-) 732 WP_056955810.1 GntR family transcriptional regulator -
  ACI6PI_RS11460 (CPBBRM18_IMEEAPEM_02290) - 2353495..2355144 (-) 1650 WP_081784508.1 alpha,alpha-phosphotrehalase -
  ACI6PI_RS11465 (CPBBRM18_IMEEAPEM_02291) rcrQ 2355715..2357445 (-) 1731 WP_404278395.1 ABC transporter ATP-binding protein Regulator
  ACI6PI_RS11470 (CPBBRM18_IMEEAPEM_02292) rcrP 2357442..2359208 (-) 1767 WP_404278397.1 ABC transporter ATP-binding protein Regulator
  ACI6PI_RS11475 (CPBBRM18_IMEEAPEM_02293) - 2359254..2359718 (-) 465 WP_404278399.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACI6PI_RS11480 (CPBBRM18_IMEEAPEM_02294) - 2360233..2360916 (-) 684 WP_056955811.1 GTP pyrophosphokinase family protein -
  ACI6PI_RS11485 (CPBBRM18_IMEEAPEM_02295) - 2360990..2362426 (-) 1437 WP_056955812.1 MFS transporter -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 63889.96 Da        Isoelectric Point: 8.1561

>NTDB_id=1160817 ACI6PI_RS11465 WP_404278395.1 2355715..2357445(-) (rcrQ) [Companilactobacillus paralimentarius strain IMDO BBRM18]
MKVIDGIKKYGSEYIKPLIIAIVFAMAGSIFTIVGPSQLSKITDLISKGLFGKIDLTKVMHIVIILTAIYVAAAVLSYGQ
GYIMATITQRFTQKLRTKITEKINNLPLQYFDTHNEGDTLSRVTNDLDTVGQSLNQSLGLLVSAVTLLLGSIVMMFTTNI
KLGTTAVLSVLVGFALTILLISKSQRYFYNQQNKLADVSGYLEEIYAGHDVVKTYNYTNQAKQEFTQLNDDLQTNVWKSQ
FLSGIMQPLMNFIGNFGYVMVSVVGAVLVLKGQISIGVIVAFMIYVRLFTQPLSQITQAFTSLQSAQAAMKRVFNFLGEE
EVEADADKQTLSGAKGNVEFDNVEFGYLPDQKIIKNFSMKAKAGQKVAIVGPTGSGKTTTVNLLMRFYDLNGGKITIDGV
DIKDMPRSNVRNQFDMVLQEAWIFEDTVRNNLVYNQKNISDEQIKAATKAVALDHFIETLPNGYDTVLDDSVSLSVGQKQ
LLTIARALIRNAPMLILDEATSSVDTRTEEQIQKAMDVLMKGRTSFVIAHRLSTIKNADLILVVKDGEIIERGTHKELMA
QNGFYTNMYNSQFTKE

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=1160817 ACI6PI_RS11465 WP_404278395.1 2355715..2357445(-) (rcrQ) [Companilactobacillus paralimentarius strain IMDO BBRM18]
ATGAAAGTAATTGATGGAATTAAGAAATATGGTTCCGAATATATCAAGCCATTGATTATAGCAATTGTCTTTGCCATGGC
AGGTAGTATCTTCACAATTGTGGGTCCTAGTCAATTAAGCAAGATCACTGATTTAATCAGTAAAGGTCTATTTGGAAAAA
TTGATTTAACAAAAGTTATGCATATTGTAATAATCTTGACCGCTATTTACGTAGCTGCTGCGGTCCTATCATATGGTCAA
GGTTATATTATGGCTACTATTACTCAACGTTTTACTCAAAAGTTAAGAACTAAAATAACTGAAAAGATTAATAATTTACC
GTTACAATACTTTGATACTCATAATGAAGGTGACACTTTAAGTCGAGTAACCAACGATTTGGATACTGTTGGTCAATCAT
TGAATCAAAGTTTAGGATTATTAGTTTCAGCTGTAACATTGCTTTTAGGTAGTATCGTTATGATGTTTACTACTAATATT
AAATTAGGAACAACTGCCGTTTTGTCAGTGTTGGTAGGATTTGCTTTGACAATACTGTTAATCTCAAAATCACAACGTTA
CTTTTACAATCAACAGAACAAATTAGCTGATGTTTCAGGCTATTTGGAAGAAATCTATGCTGGACATGATGTTGTAAAAA
CTTATAACTATACGAACCAAGCTAAGCAAGAATTCACACAATTGAATGATGATCTACAGACAAATGTTTGGAAATCACAA
TTTTTATCAGGAATAATGCAACCGTTGATGAATTTCATTGGTAACTTTGGTTACGTAATGGTCAGTGTTGTCGGCGCTGT
TTTAGTATTGAAAGGTCAAATCAGTATTGGTGTAATTGTAGCTTTTATGATCTATGTACGATTGTTTACGCAACCTCTAT
CACAGATTACACAGGCTTTTACCAGCTTGCAATCAGCTCAAGCAGCTATGAAACGGGTTTTTAATTTTCTCGGTGAAGAA
GAAGTTGAAGCAGATGCTGACAAGCAAACCTTATCTGGTGCGAAAGGAAATGTTGAATTTGATAATGTTGAATTCGGTTA
TCTGCCAGATCAGAAAATCATTAAGAATTTCTCGATGAAAGCAAAGGCAGGACAAAAAGTCGCCATTGTTGGTCCAACGG
GATCAGGCAAGACAACTACTGTTAACTTATTAATGCGTTTCTATGATTTGAATGGCGGAAAAATTACGATTGATGGTGTT
GATATTAAAGATATGCCACGTTCCAACGTTAGAAATCAGTTCGATATGGTTCTGCAGGAGGCCTGGATTTTCGAGGATAC
TGTTAGAAATAATTTAGTTTACAATCAAAAAAATATTTCAGATGAACAAATTAAAGCTGCAACCAAGGCTGTCGCTTTGG
ATCATTTTATTGAAACACTACCAAACGGTTACGATACCGTTCTGGATGATTCAGTGAGCCTCTCAGTGGGACAAAAGCAA
TTATTGACAATTGCACGGGCTCTAATTAGAAACGCTCCTATGTTGATTTTGGATGAAGCAACTAGTTCAGTTGATACTAG
AACTGAAGAACAGATTCAAAAGGCAATGGATGTTTTGATGAAGGGCAGAACATCATTTGTCATTGCGCATCGACTTTCAA
CTATTAAGAATGCTGATTTGATCTTAGTAGTTAAAGATGGAGAGATTATTGAACGAGGAACTCATAAAGAGTTGATGGCA
CAGAATGGTTTCTACACAAATATGTACAATAGTCAATTTACTAAAGAGTAG

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(18-293)

ABC transporter (ABC_tran)

(355-502)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

61.828

96.875

0.599

Multiple sequence alignment