Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACI6OU_RS02295 Genome accession   NZ_OY737369
Coordinates   432719..434101 (+) Length   460 a.a.
NCBI ID   WP_014081755.1    Uniprot ID   A0A5C4TJ55
Organism   Fructilactobacillus sanfranciscensis strain ACADC 3378     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 427719..439101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI6OU_RS02270 (FSACADC3378_DKGBJENM_00443) - 428017..428688 (+) 672 WP_056958139.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase -
  ACI6OU_RS02275 (FSACADC3378_DKGBJENM_00444) - 428786..429838 (+) 1053 WP_163600933.1 WxL protein host-binding domain-containing protein -
  ACI6OU_RS02280 (FSACADC3378_DKGBJENM_00445) - 429947..431281 (-) 1335 WP_163602021.1 C1 family peptidase -
  ACI6OU_RS02285 (FSACADC3378_DKGBJENM_00446) rpiA 431336..432022 (-) 687 WP_163602020.1 ribose-5-phosphate isomerase RpiA -
  ACI6OU_RS02290 (FSACADC3378_DKGBJENM_00447) - 432170..432706 (+) 537 WP_056958132.1 dUTP diphosphatase -
  ACI6OU_RS02295 (FSACADC3378_DKGBJENM_00448) radA 432719..434101 (+) 1383 WP_014081755.1 DNA repair protein RadA Machinery gene
  ACI6OU_RS02300 (FSACADC3378_DKGBJENM_00449) gltX 434175..435665 (+) 1491 WP_056958128.1 glutamate--tRNA ligase -
  ACI6OU_RS02305 (FSACADC3378_DKGBJENM_00450) cysS 435772..437190 (+) 1419 WP_014081757.1 cysteine--tRNA ligase -
  ACI6OU_RS02310 (FSACADC3378_DKGBJENM_00451) - 437190..437615 (+) 426 WP_056958124.1 Mini-ribonuclease 3 -
  ACI6OU_RS02315 (FSACADC3378_DKGBJENM_00452) rlmB 437605..438357 (+) 753 WP_103423232.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ACI6OU_RS02320 (FSACADC3378_DKGBJENM_00453) - 438360..438899 (+) 540 WP_156843406.1 NYN domain-containing protein -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 50031.36 Da        Isoelectric Point: 6.5927

>NTDB_id=1160780 ACI6OU_RS02295 WP_014081755.1 432719..434101(+) (radA) [Fructilactobacillus sanfranciscensis strain ACADC 3378]
MAKASTRFVCSNCGYVSPTYLGRCPNCGEWNTFEEETVTKNDTKTANVTRVSFEGKKSRPTLIDDVDAHDAPRYKIESNE
LNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSGQLSHYGKRVLYVTGEESADQVKMRSDRLGVKHLDNLYVFPETDMTA
IREAIANVKPDVVIIDSVQTMQEGDVASAVGSVSQVRGVTADLMNIAKTNNITIFVVGHVTKGGAIAGPKTLEHMVDTVL
YFEGDKHHAYRLLRAVKNRFGSTNELGIFEMVDTGLKEVANPSEIFLEERLHNATGSAIVVAMEGTRPILVEIQALITPS
VFGNAQRTATGVDRNRVSLIMAVLEKRAGLMLQNQDAYLKAAGGVKLVEPAIDLAMAISIASSYEDISTDPKECYIGELG
LTGEIRRVDRIEQRIREATKLGFSRVIVPKHNLDGLKMDFDIDVVGVTTIREALKVALKK

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=1160780 ACI6OU_RS02295 WP_014081755.1 432719..434101(+) (radA) [Fructilactobacillus sanfranciscensis strain ACADC 3378]
ATGGCAAAGGCATCGACACGATTTGTTTGTTCTAATTGTGGTTATGTTTCACCCACTTATTTGGGACGTTGTCCTAACTG
TGGTGAGTGGAATACGTTTGAAGAAGAAACGGTTACCAAAAACGATACGAAAACAGCCAATGTAACCAGGGTTTCATTTG
AAGGGAAGAAATCAAGACCAACTTTAATTGATGATGTTGACGCTCACGATGCACCCCGTTATAAAATCGAATCGAACGAA
TTAAATCGTGTATTGGGTGGTGGAGTAGTTCCAGGGTCTTTAGTTTTAATTGGTGGTGACCCAGGAATTGGAAAGTCAAC
GTTGTTATTACAAGTTTCTGGACAATTAAGTCATTATGGTAAACGAGTTTTGTACGTTACTGGAGAAGAAAGTGCGGATC
AAGTTAAGATGCGTTCGGATCGACTTGGTGTTAAGCATCTTGATAATTTATATGTTTTCCCAGAAACTGATATGACGGCT
ATTCGGGAAGCAATTGCAAATGTCAAACCAGATGTTGTCATTATTGATTCAGTGCAAACGATGCAAGAAGGCGACGTGGC
ATCAGCAGTTGGTTCTGTTTCACAAGTCCGTGGCGTGACTGCTGATTTAATGAACATTGCGAAGACTAACAATATTACCA
TTTTTGTCGTGGGACATGTGACTAAAGGTGGAGCGATTGCTGGACCAAAGACTTTAGAGCATATGGTTGATACCGTTTTG
TATTTTGAAGGTGACAAGCATCATGCTTATCGTTTGTTGCGAGCCGTTAAAAATCGATTTGGTTCAACTAATGAATTAGG
AATTTTTGAAATGGTTGATACAGGACTAAAAGAAGTTGCTAATCCATCTGAAATCTTTTTAGAAGAACGGTTGCATAACG
CTACCGGTTCCGCGATTGTAGTTGCGATGGAAGGGACTCGTCCCATTTTAGTTGAAATCCAAGCTTTAATCACGCCCTCA
GTCTTTGGGAATGCCCAACGAACTGCGACAGGAGTTGACCGAAATCGGGTTTCTTTGATTATGGCCGTTTTGGAAAAACG
AGCAGGCTTGATGTTACAAAACCAGGATGCATATTTAAAAGCTGCTGGAGGCGTTAAGCTAGTTGAACCTGCAATTGATT
TAGCAATGGCAATCAGTATTGCTTCTAGTTATGAAGACATTAGTACTGATCCAAAAGAATGTTATATTGGTGAATTAGGT
TTGACTGGTGAAATTCGTCGGGTTGATCGAATTGAGCAACGAATTCGTGAAGCTACTAAATTAGGTTTTTCCCGTGTGAT
TGTGCCCAAACATAATTTAGATGGATTAAAAATGGATTTTGATATTGATGTGGTTGGAGTTACTACCATCCGCGAAGCTT
TGAAAGTTGCTTTAAAGAAATAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(77-224)

Subunit ChlI of Mg-chelatase (ChlI)

(370-432)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5C4TJ55

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

65.132

99.13

0.646
  radA Streptococcus pneumoniae D39

65.132

99.13

0.646
  radA Streptococcus pneumoniae R6

65.132

99.13

0.646
  radA Streptococcus pneumoniae TIGR4

65.132

99.13

0.646
  radA Streptococcus mitis SK321

65.132

99.13

0.646
  radA Streptococcus mitis NCTC 12261

65.132

99.13

0.646
  radA Bacillus subtilis subsp. subtilis str. 168

61.135

99.565

0.609

Multiple sequence alignment