Detailed information NTG1160761

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: R2K28_RS16940
• Genome accession: NZ_OY734020
• Coordinates: 3712144..3713133 (+)
• Length: 329 a.a.
• NCBI ID: WP_116447148.1
• Uniprot ID: -
• Organism: Candidatus Thiodiazotropha sp. CDECU1 isolate 46184
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3707144..3718133

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R2K28_RS16915	-	3707682..3707936 (-)	255	WP_116445920.1	YfhL family 4Fe-4S dicluster ferredoxin	-
R2K28_RS16920	coaD	3708045..3708521 (-)	477	WP_316366292.1	pantetheine-phosphate adenylyltransferase	-
R2K28_RS16925	rsmD	3708584..3709156 (-)	573	WP_316366294.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
R2K28_RS16930	-	3709181..3710539 (-)	1359	WP_316366296.1	pitrilysin family protein	-
R2K28_RS16935	-	3710529..3711869 (-)	1341	WP_316369767.1	pitrilysin family protein	-
R2K28_RS16940	pilA	3712144..3713133 (+)	990	WP_116447148.1	signal recognition particle-docking protein FtsY	Machinery gene
R2K28_RS16945	ftsE	3713153..3713836 (+)	684	WP_316369769.1	cell division ATP-binding protein FtsE	-
R2K28_RS16950	ftsX	3713826..3714770 (+)	945	WP_316366298.1	permease-like cell division protein FtsX	-
R2K28_RS16955	rpoH	3715049..3715894 (+)	846	WP_316366300.1	RNA polymerase sigma factor RpoH	-
R2K28_RS16960	-	3715979..3716572 (-)	594	WP_316366301.1	SCO family protein	-
R2K28_RS16965	-	3716870..3717742 (+)	873	WP_316366303.1	phosphate ABC transporter substrate-binding protein	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 35772.96 Da
• Isoelectric Point: 5.1384

>NTDB_id=1160761 R2K28_RS16940 WP_116447148.1 3712144..3713133(+) (pilA) [Candidatus Thiodiazotropha sp. CDECU1 isolate 46184]
MFGFGKGKKQDQQGAASLPPEEEKRGLFSRLQERLSRTRHNLTDGLSNLLLGRKTIDDELLEELETLLLTADVGVEATSR
IINDLTQRVDRKELSDPQLLMQLLKQHLREILLACDEPIGEHNGGKPLVMLMVGINGAGKTTTIGKLARKFQLDGESVML
AAGDTFRAAAVEQLQTWGERNQIQVIAQHTGADAASVVFDALQAATSRSIDVLIADTAGRLHTKANLMEELAKISRVMKK
IDPDAPHEVLLVVDAGTGQNAVNQAVQFHQTVGLTGLVITKLDGTAKGGVVFAIADKVKVPIRFIGVGEAIEDLREFNPD
EFVDALFET

Nucleotide

• Length: 990 bp

>NTDB_id=1160761 R2K28_RS16940 WP_116447148.1 3712144..3713133(+) (pilA) [Candidatus Thiodiazotropha sp. CDECU1 isolate 46184]
ATGTTCGGATTTGGCAAGGGCAAGAAACAGGATCAGCAGGGTGCTGCGTCCCTCCCTCCGGAAGAGGAGAAGCGCGGCCT
CTTTTCTCGACTTCAAGAACGCCTCTCGCGTACCCGCCACAATCTCACGGACGGACTGTCGAATCTCCTCCTTGGGCGCA
AGACCATCGATGATGAACTGCTGGAGGAGCTCGAAACCCTGCTTCTCACCGCTGATGTGGGAGTGGAGGCAACCAGCCGC
ATCATCAACGATTTGACACAGCGGGTCGATCGCAAGGAACTGAGCGATCCGCAGCTGTTGATGCAACTCTTGAAACAACA
CCTCAGAGAGATTCTGCTGGCATGCGACGAGCCTATCGGCGAACACAACGGCGGCAAGCCACTGGTGATGCTGATGGTCG
GTATCAACGGCGCGGGCAAGACCACCACCATAGGGAAGTTGGCGCGCAAGTTTCAGCTGGATGGGGAGTCGGTCATGCTC
GCCGCGGGAGATACCTTCCGCGCCGCCGCTGTGGAGCAACTGCAAACCTGGGGTGAGAGAAACCAGATCCAGGTGATCGC
CCAACACACCGGTGCTGATGCGGCTTCAGTCGTGTTCGATGCACTGCAGGCAGCCACATCACGCAGCATCGACGTCCTGA
TCGCCGACACGGCGGGGCGTCTGCACACCAAGGCCAATCTAATGGAGGAGTTGGCGAAGATCAGCCGGGTGATGAAGAAG
ATCGATCCCGACGCTCCCCATGAAGTACTATTGGTTGTGGATGCGGGTACCGGACAGAATGCGGTCAACCAAGCCGTGCA
GTTTCACCAGACTGTCGGCTTGACCGGACTGGTGATCACCAAGCTGGACGGTACCGCAAAAGGCGGTGTCGTTTTCGCCA
TTGCCGACAAGGTCAAGGTGCCTATCCGCTTTATCGGTGTCGGCGAAGCCATTGAAGATCTGCGTGAATTCAACCCGGAC
GAGTTTGTAGACGCCCTGTTTGAAACCTAA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (128-327)

• SRP54-type protein, helical bundle domain (SRP54_N) (42-108)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	51.623	93.617	0.483