Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   RCP16_RS22165 Genome accession   NZ_OY725677
Coordinates   5014744..5016117 (+) Length   457 a.a.
NCBI ID   WP_069328326.1    Uniprot ID   A0A1E3L1G3
Organism   Paenibacillus nuruki strain AASFL403 isolate AASFL403     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5009744..5021117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCP16_RS22145 (AASFL403_22290) - 5009930..5010391 (+) 462 WP_069328322.1 CtsR family transcriptional regulator -
  RCP16_RS22150 (AASFL403_22295) - 5010419..5010942 (+) 524 Protein_4325 UvrB/UvrC motif-containing protein -
  RCP16_RS22155 (AASFL403_22305) - 5010956..5012029 (+) 1074 WP_137225658.1 protein arginine kinase -
  RCP16_RS22160 (AASFL403_22310) clpC 5012050..5014545 (+) 2496 WP_069328325.1 ATP-dependent protease ATP-binding subunit ClpC -
  RCP16_RS22165 (AASFL403_22315) radA 5014744..5016117 (+) 1374 WP_069328326.1 DNA repair protein RadA Machinery gene
  RCP16_RS22170 (AASFL403_22320) disA 5016130..5017206 (+) 1077 WP_069328327.1 DNA integrity scanning diadenylate cyclase DisA -
  RCP16_RS22175 (AASFL403_22325) pssA 5017262..5017972 (+) 711 WP_069328328.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  RCP16_RS22180 (AASFL403_22330) - 5018077..5019069 (+) 993 WP_308641373.1 PIN/TRAM domain-containing protein -
  RCP16_RS22185 (AASFL403_22335) ispD 5019197..5019892 (+) 696 WP_308641374.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  RCP16_RS22190 (AASFL403_22340) ispF 5019892..5020368 (+) 477 WP_069328331.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49843.47 Da        Isoelectric Point: 7.1650

>NTDB_id=1160646 RCP16_RS22165 WP_069328326.1 5014744..5016117(+) (radA) [Paenibacillus nuruki strain AASFL403 isolate AASFL403]
MAKVKTKFFCTECGYESPKWYGKCPGCQSWNSMVEEKESNVKTQGMNSSLFQTQTKQKPQAITEIESGKEPRIQTGIGEL
NRVLGGGVVPGSLVLVGGDPGIGKSTLLLQTSYALTQAGLRVLYISGEESVRQTKLRAERLGALSDQLFVLCESNMDLIE
EAIDQLDPHFLVIDSIQTVYQPEVTSAPGSVSQVRECTSRFMRVAKIRGVATVLVGHVTKEGAIAGPRMLEHMVDCVLYF
EGERHHTYRILRAVKNRFGSTNEMGIFEMHEDGLIEVSNPSELFISERSIGVAGSTVVASMEGTRPMLVELQALVAATHF
PSPRRMGTGVDHNRLSLIIAVLEKRMGMFLQNQDAYLNVAGGVKLDEPAVDLAIAVSLASSFKDVPTKPDDVIFGEIGLT
GEVRGVSRAEQRVKEAAKLGFKRVILPEKSLKGWKHPKGIQLIGINTVAEALKAALD

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=1160646 RCP16_RS22165 WP_069328326.1 5014744..5016117(+) (radA) [Paenibacillus nuruki strain AASFL403 isolate AASFL403]
ATGGCTAAAGTCAAAACCAAGTTTTTTTGTACAGAATGTGGATACGAATCTCCAAAATGGTATGGTAAATGTCCGGGATG
TCAGTCTTGGAATAGTATGGTTGAAGAAAAAGAAAGCAATGTAAAAACACAAGGGATGAATTCTTCTTTATTTCAGACAC
AGACGAAGCAAAAACCGCAAGCCATTACAGAAATTGAAAGCGGCAAAGAACCTCGCATCCAGACAGGGATTGGAGAACTA
AACCGTGTATTAGGTGGTGGTGTTGTTCCAGGTTCGCTAGTCTTAGTCGGTGGAGATCCGGGTATCGGTAAGTCTACATT
GTTATTACAAACTTCCTATGCGCTAACACAAGCTGGATTACGTGTTCTTTATATATCAGGAGAAGAGTCGGTAAGACAGA
CCAAGTTACGTGCAGAACGTCTTGGAGCCTTATCAGATCAATTATTTGTACTTTGTGAAAGTAATATGGATCTGATCGAA
GAAGCGATTGATCAATTAGATCCTCATTTTCTAGTGATCGATTCTATACAGACGGTATATCAACCTGAAGTTACTAGTGC
ACCAGGTAGTGTATCTCAAGTACGTGAGTGTACATCACGATTTATGAGAGTAGCCAAAATTCGTGGAGTGGCTACAGTGC
TTGTAGGGCATGTTACCAAAGAAGGTGCAATTGCAGGCCCAAGGATGCTTGAACATATGGTAGACTGTGTACTTTATTTT
GAAGGGGAACGTCATCATACGTACAGAATATTAAGAGCTGTTAAAAATCGTTTTGGTTCTACCAATGAAATGGGTATTTT
TGAAATGCATGAAGATGGATTGATCGAAGTCTCCAATCCGTCTGAATTATTTATATCAGAACGTTCGATAGGTGTAGCCG
GCTCTACAGTGGTTGCTAGTATGGAAGGCACACGCCCTATGCTTGTTGAACTGCAAGCGCTTGTTGCTGCAACTCATTTT
CCTTCTCCACGTCGTATGGGAACAGGTGTTGATCATAACCGATTGAGTCTGATTATTGCTGTATTGGAAAAGCGGATGGG
GATGTTTCTACAAAATCAGGATGCTTATCTGAATGTAGCAGGCGGAGTGAAATTAGATGAACCTGCTGTAGATTTAGCAA
TTGCAGTCAGTCTAGCTTCTAGCTTCAAAGACGTTCCAACCAAACCAGATGATGTGATATTTGGAGAAATTGGATTGACT
GGTGAAGTGCGTGGTGTATCTCGGGCAGAACAACGGGTTAAAGAAGCTGCCAAGTTAGGATTTAAACGAGTGATTTTACC
CGAAAAAAGTCTGAAAGGATGGAAGCATCCTAAAGGTATACAATTAATCGGTATTAATACAGTAGCAGAAGCATTAAAGG
CTGCGTTAGATTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(348-429)

AAA domain (AAA_25)

(77-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1E3L1G3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

67.105

99.781

0.67
  radA Streptococcus mitis NCTC 12261

59.382

99.125

0.589
  radA Streptococcus pneumoniae Rx1

59.382

99.125

0.589
  radA Streptococcus pneumoniae D39

59.382

99.125

0.589
  radA Streptococcus pneumoniae R6

59.382

99.125

0.589
  radA Streptococcus pneumoniae TIGR4

59.382

99.125

0.589
  radA Streptococcus mitis SK321

59.161

99.125

0.586

Multiple sequence alignment