Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   RCP16_RS10355 Genome accession   NZ_OY725677
Coordinates   2374235..2374630 (-) Length   131 a.a.
NCBI ID   WP_371748229.1    Uniprot ID   -
Organism   Paenibacillus nuruki strain AASFL403 isolate AASFL403     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2369235..2379630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCP16_RS10325 (AASFL403_10400) rpmF 2369646..2369819 (-) 174 WP_069327428.1 50S ribosomal protein L32 -
  RCP16_RS10330 (AASFL403_10405) - 2369880..2370320 (-) 441 WP_241669335.1 DUF177 domain-containing protein -
  RCP16_RS10335 (AASFL403_10410) - 2370541..2371761 (+) 1221 WP_137222659.1 nucleotidyltransferase -
  RCP16_RS10340 (AASFL403_10415) - 2371785..2372783 (-) 999 WP_308642336.1 S16 family serine protease -
  RCP16_RS10345 (AASFL403_10420) coaD 2372903..2373418 (-) 516 WP_069327432.1 pantetheine-phosphate adenylyltransferase -
  RCP16_RS10350 (AASFL403_10425) rsmD 2373411..2374034 (-) 624 WP_371748217.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  RCP16_RS10355 (AASFL403_10430) nucA/comI 2374235..2374630 (-) 396 WP_371748229.1 sporulation protein Machinery gene
  RCP16_RS10360 (AASFL403_10435) - 2375070..2375246 (+) 177 WP_069327434.1 YjfB family protein -
  RCP16_RS10365 (AASFL403_10440) - 2375408..2376322 (-) 915 WP_308642474.1 SMP-30/gluconolactonase/LRE family protein -
  RCP16_RS10370 (AASFL403_10445) - 2376346..2377008 (-) 663 WP_308642338.1 SGNH/GDSL hydrolase family protein -
  RCP16_RS10375 (AASFL403_10450) - 2377063..2377842 (-) 780 WP_308642339.1 alpha/beta hydrolase -
  RCP16_RS10380 (AASFL403_10455) - 2377970..2378803 (-) 834 WP_069327437.1 AraC family transcriptional regulator -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14408.04 Da        Isoelectric Point: 4.8940

>NTDB_id=1160634 RCP16_RS10355 WP_371748229.1 2374235..2374630(-) (nucA/comI) [Paenibacillus nuruki strain AASFL403 isolate AASFL403]
MLVTVSFLVQGEGKIHNTIYAAAAYDYTLTFPTSRYPETADHIKDAIADGHSEVCTIDRDGADQRREDSLKGVPTKSGYD
RDEWPMAMCLEGGTGADIRYVTPSDNRGAGSWVGNQLTKYPDGTKVKFILQ

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1160634 RCP16_RS10355 WP_371748229.1 2374235..2374630(-) (nucA/comI) [Paenibacillus nuruki strain AASFL403 isolate AASFL403]
ATGTTAGTAACGGTGTCATTTTTAGTGCAAGGTGAGGGCAAAATACATAATACGATATACGCAGCAGCAGCCTATGATTA
CACACTTACTTTTCCAACCAGTCGTTACCCTGAGACAGCAGATCATATCAAAGACGCAATTGCAGATGGACATTCTGAAG
TCTGTACGATTGATCGGGATGGCGCAGATCAAAGACGTGAAGATTCATTAAAAGGAGTACCTACCAAATCCGGTTATGAT
CGTGATGAGTGGCCGATGGCGATGTGTCTTGAAGGCGGTACAGGAGCTGATATCCGTTATGTCACACCTTCAGACAACCG
CGGAGCAGGATCATGGGTGGGTAACCAATTGACTAAATATCCGGATGGAACCAAAGTGAAATTTATATTGCAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(33-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.832

81.679

0.603

Multiple sequence alignment