Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACI6PE_RS02805 Genome accession   NZ_OY725319
Coordinates   639390..640763 (+) Length   457 a.a.
NCBI ID   WP_057732403.1    Uniprot ID   A0A1Y6JX22
Organism   Levilactobacillus zymae strain LMG 22198     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 634390..645763
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI6PE_RS02780 (LZ22198_MCBDPFMK_00561) - 634900..636204 (+) 1305 WP_057730536.1 IS1380 family transposase -
  ACI6PE_RS02785 (LZ22198_MCBDPFMK_00562) - 636592..637500 (+) 909 WP_057732393.1 hypothetical protein -
  ACI6PE_RS02790 (LZ22198_MCBDPFMK_00563) rpiA 637544..638230 (-) 687 WP_057732391.1 ribose-5-phosphate isomerase RpiA -
  ACI6PE_RS02795 (LZ22198_MCBDPFMK_00564) - 638238..638573 (-) 336 WP_057732389.1 hypothetical protein -
  ACI6PE_RS02800 (LZ22198_MCBDPFMK_00565) - 638767..639306 (+) 540 WP_057732387.1 dUTP diphosphatase -
  ACI6PE_RS02805 (LZ22198_MCBDPFMK_00566) radA 639390..640763 (+) 1374 WP_057732403.1 DNA repair protein RadA Machinery gene
  ACI6PE_RS02810 (LZ22198_MCBDPFMK_00567) - 640795..641964 (+) 1170 WP_057732386.1 PIN/TRAM domain-containing protein -
  ACI6PE_RS02815 (LZ22198_MCBDPFMK_00568) gltX 642211..643701 (+) 1491 WP_057732384.1 glutamate--tRNA ligase -
  ACI6PE_RS02820 (LZ22198_MCBDPFMK_00569) - 643956..644084 (+) 129 WP_263862347.1 hypothetical protein -
  ACI6PE_RS02825 (LZ22198_MCBDPFMK_00570) cysS 644234..645649 (+) 1416 WP_057732382.1 cysteine--tRNA ligase -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49570.14 Da        Isoelectric Point: 6.9034

>NTDB_id=1160600 ACI6PE_RS02805 WP_057732403.1 639390..640763(+) (radA) [Levilactobacillus zymae strain LMG 22198]
MAKVKTKFVCQNCDYSSPRYLGRCPNCGEWNTMVEETVTPEVKPQSTRVTPAGEHTRPQLMNEIKHTTETRVKTQMEELN
RVLGGGIVPGSLILIGGDPGIGKSTLLLQVSGQLSATGGKVLYVSGEESASQIKMRADRLVVNAEHLYLYPETDMVSIRA
NIEEMHPDYVIIDSVQTMQAPGIESAIGSVSQIRAVTGELMQIAKTNGITIFVVGHVTKGGAIAGPKILEHMVDTVLYFE
GDLHHTYRILRAVKNRFGSTNELGIFEMKEGGLYEVANPSEIFLEERLKDATGSAIVVSMEGTRPILVEVQALITPSVFG
NAQRTASGLDRNRVSLLMAVLEKRANLMLQNQDAFLKAAGGVKLDEPAIDLAIALSIASSYKDTATAPTDCFVGEVGLTG
EIRRVSRIEQRVAEAKKLGFQRIFVPKNNLQGWTPPAGIDVIGVSTLRQALKLALGV

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=1160600 ACI6PE_RS02805 WP_057732403.1 639390..640763(+) (radA) [Levilactobacillus zymae strain LMG 22198]
GTGGCCAAGGTTAAAACGAAATTTGTGTGTCAAAATTGTGATTACAGTTCCCCCCGGTATTTGGGCCGTTGCCCGAACTG
TGGGGAATGGAACACCATGGTCGAGGAGACCGTCACGCCGGAAGTTAAACCGCAATCGACGCGGGTCACGCCGGCCGGTG
AACACACCCGACCGCAATTGATGAATGAAATCAAGCACACCACCGAAACGCGGGTCAAAACGCAAATGGAAGAACTCAAC
CGGGTCTTAGGGGGCGGCATCGTGCCGGGGTCCCTGATCCTGATTGGGGGCGATCCGGGAATCGGAAAATCGACGTTGCT
CCTGCAGGTGTCGGGCCAACTCAGCGCGACCGGGGGCAAGGTCTTGTACGTGTCCGGTGAAGAAAGCGCCAGTCAGATCA
AGATGCGGGCCGACCGGCTGGTGGTCAACGCCGAACACCTTTACCTGTACCCGGAGACCGACATGGTCAGCATTCGGGCC
AACATCGAAGAGATGCACCCGGACTACGTGATCATCGATTCCGTGCAGACCATGCAGGCGCCGGGCATCGAATCAGCCAT
TGGGTCGGTTTCTCAGATTCGCGCGGTCACCGGTGAATTGATGCAGATTGCTAAGACCAACGGCATCACCATCTTTGTGG
TGGGTCACGTGACCAAGGGCGGTGCCATCGCCGGTCCGAAGATTCTGGAACACATGGTGGATACGGTCCTGTATTTTGAA
GGCGACCTACACCACACTTACCGGATTTTGCGGGCGGTCAAGAACCGGTTTGGGTCGACCAACGAACTGGGAATCTTCGA
AATGAAGGAAGGCGGCCTGTATGAGGTGGCTAACCCGTCGGAGATTTTCCTGGAAGAACGCCTGAAAGACGCGACTGGCT
CGGCCATCGTGGTGTCGATGGAGGGGACCCGACCGATTTTGGTCGAAGTCCAAGCCTTGATCACGCCATCGGTCTTCGGC
AACGCCCAACGAACCGCGAGCGGCTTAGACCGTAACCGGGTCTCGTTATTGATGGCGGTGCTGGAGAAGCGGGCCAACCT
GATGTTGCAAAATCAGGACGCTTTCTTGAAGGCCGCCGGGGGCGTTAAGCTAGACGAACCGGCCATTGACTTGGCGATTG
CGTTGAGTATCGCGTCGAGCTACAAGGACACGGCAACGGCGCCCACGGACTGTTTCGTGGGGGAAGTCGGGCTGACCGGG
GAAATTCGGCGCGTGAGTCGGATCGAACAACGGGTAGCTGAAGCCAAGAAACTGGGGTTCCAACGAATCTTCGTGCCTAA
GAATAACCTGCAAGGCTGGACGCCGCCGGCCGGCATCGACGTTATCGGGGTGTCGACCTTGCGGCAGGCATTGAAACTTG
CACTGGGCGTCTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(63-221)

Subunit ChlI of Mg-chelatase (ChlI)

(363-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y6JX22

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

68.805

98.906

0.681
  radA Streptococcus mitis NCTC 12261

68.584

98.906

0.678
  radA Streptococcus pneumoniae Rx1

68.584

98.906

0.678
  radA Streptococcus pneumoniae D39

68.584

98.906

0.678
  radA Streptococcus pneumoniae R6

68.584

98.906

0.678
  radA Streptococcus pneumoniae TIGR4

68.584

98.906

0.678
  radA Bacillus subtilis subsp. subtilis str. 168

64.859

100

0.654

Multiple sequence alignment