Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ACI6O9_RS09385 Genome accession   NZ_OY725316
Coordinates   1924563..1926371 (-) Length   602 a.a.
NCBI ID   WP_057706710.1    Uniprot ID   A0A0R2M6R5
Organism   Lactiplantibacillus xiangfangensis strain IMDO EBMM8     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1919563..1931371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI6O9_RS09360 (LXEBMM8_EKPBGFGD_01875) - 1920492..1921130 (+) 639 WP_057706705.1 copper homeostasis protein CutC -
  ACI6O9_RS09365 (LXEBMM8_EKPBGFGD_01876) - 1921196..1922080 (-) 885 WP_057706706.1 RluA family pseudouridine synthase -
  ACI6O9_RS09370 (LXEBMM8_EKPBGFGD_01877) - 1922077..1922883 (-) 807 WP_057706707.1 NAD kinase -
  ACI6O9_RS09375 (LXEBMM8_EKPBGFGD_01878) - 1922880..1923542 (-) 663 WP_057706708.1 GTP pyrophosphokinase family protein -
  ACI6O9_RS09380 (LXEBMM8_EKPBGFGD_01879) - 1923841..1924476 (+) 636 WP_057706709.1 DsbA family protein -
  ACI6O9_RS09385 (LXEBMM8_EKPBGFGD_01880) pepF 1924563..1926371 (-) 1809 WP_057706710.1 oligoendopeptidase F Regulator
  ACI6O9_RS09390 (LXEBMM8_EKPBGFGD_01881) - 1926448..1927533 (-) 1086 WP_404411076.1 competence protein CoiA -
  ACI6O9_RS09395 (LXEBMM8_EKPBGFGD_01882) - 1927623..1928354 (-) 732 WP_057706712.1 adaptor protein MecA -
  ACI6O9_RS09400 (LXEBMM8_EKPBGFGD_01883) spxA 1928493..1928891 (-) 399 WP_057706713.1 transcriptional regulator SpxA -
  ACI6O9_RS09405 (LXEBMM8_EKPBGFGD_01884) - 1929183..1929926 (-) 744 WP_057706720.1 MBL fold metallo-hydrolase -
  ACI6O9_RS09410 (LXEBMM8_EKPBGFGD_01885) - 1930080..1930580 (+) 501 WP_057706714.1 hypothetical protein -
  ACI6O9_RS09415 - 1930703..1931023 (-) 321 WP_057706715.1 hypothetical protein -
  ACI6O9_RS09420 (LXEBMM8_EKPBGFGD_01886) - 1931167..1931295 (-) 129 WP_404411080.1 hypothetical protein -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 67444.68 Da        Isoelectric Point: 5.3265

>NTDB_id=1160588 ACI6O9_RS09385 WP_057706710.1 1924563..1926371(-) (pepF) [Lactiplantibacillus xiangfangensis strain IMDO EBMM8]
MVATKQLPTRAAVPEALTWDLTKIYADQTAYREDVEQVKAALPTVTALKAHFTDSADTVLAGIQGVLGLYRRLEKVAVYA
SLKSDQDTGNSTNAALDDQAGSLTAKVSAATAWFEPALLTLSPAQLDQFLDENVALRDYRHLLDTVRLQKGHVLSESEEA
LLAGAGDIFDASAKTFGVLNNADFDFPTVQDEAGNPVKLSQGIYGVLLESVQPAVRRQAFEALYKVYGQFRRTLASTLAS
QVKVHNFVAQAHHYPDARTAALAANQIPTSVYDSLVSSVDNHLALLHRYVALRKKILGVDELHMYDLYTPLTKKPAVNYT
YERAQGTALQALKVLGPDYLKHVKTAFNSRWIDVVENQGKRSGAYSSGMYDTAPYILLNWQDNIDNLYTLVHEMGHSMHS
YLTTHNQPYQYGDYSIFVAEIASTTNENLLTNYFLAHETDPQMRAYVLNYYLDGFKGTVFRQTQFAEFEQWLHEQDAAGQ
ALTADRLSKYYLQLNQRYYGDAVVSDPQIADEWSRIPHFYYNYYVYQYATGFAAASTLAERMTTNQPDAVKDYLGYLKAG
SSAFPIDVMHAAGVDMTKPTYLDDAFKVFEERLDEFEQLVTK

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=1160588 ACI6O9_RS09385 WP_057706710.1 1924563..1926371(-) (pepF) [Lactiplantibacillus xiangfangensis strain IMDO EBMM8]
ATGGTAGCAACAAAACAACTCCCGACACGCGCAGCCGTGCCCGAGGCATTGACTTGGGACCTCACTAAGATTTACGCCGA
TCAAACGGCATACCGTGAAGATGTTGAGCAAGTTAAGGCTGCTCTACCAACTGTCACGGCGTTAAAAGCACACTTTACCG
ATAGTGCGGATACCGTTCTAGCCGGTATTCAAGGTGTTTTAGGACTTTACCGTCGCTTGGAAAAAGTCGCCGTTTATGCC
AGTCTTAAGAGTGACCAAGATACGGGTAATAGCACTAACGCAGCTTTGGATGATCAAGCAGGGAGCCTAACTGCAAAAGT
TTCGGCTGCCACCGCTTGGTTTGAGCCAGCGTTACTGACCTTGAGTCCAGCACAATTGGACCAATTTTTAGATGAAAACG
TCGCACTCCGCGATTATCGACATTTATTGGATACGGTACGACTTCAAAAGGGACACGTCCTATCCGAGTCCGAGGAAGCT
TTATTAGCGGGTGCTGGGGATATTTTTGATGCGTCCGCTAAGACGTTTGGGGTTTTAAACAACGCCGACTTTGATTTTCC
AACGGTTCAAGATGAAGCTGGTAACCCAGTCAAACTCTCACAGGGGATTTACGGTGTCTTGTTGGAATCGGTGCAACCCG
CTGTTCGCCGGCAAGCGTTTGAGGCTTTGTATAAAGTTTACGGCCAGTTCCGTCGAACGCTAGCATCAACCCTAGCTAGT
CAAGTCAAAGTGCATAACTTTGTTGCCCAGGCGCACCATTATCCCGATGCGCGGACTGCAGCGTTGGCCGCCAACCAAAT
TCCAACGTCGGTCTATGATTCATTGGTTAGTTCAGTCGATAACCACTTGGCTTTACTTCACCGTTACGTTGCCCTGCGGA
AGAAGATCCTAGGTGTCGATGAACTGCATATGTATGATCTGTATACGCCACTGACAAAGAAGCCCGCTGTTAATTACACT
TATGAGCGTGCTCAGGGGACGGCGTTACAAGCTTTAAAGGTTCTGGGCCCGGATTACTTAAAACACGTTAAAACGGCGTT
TAATTCGCGTTGGATTGATGTCGTTGAAAACCAGGGTAAACGTAGCGGCGCGTACTCGTCAGGAATGTACGATACGGCAC
CGTATATCTTACTTAACTGGCAGGATAATATCGATAACCTCTACACGCTAGTCCACGAGATGGGACACAGCATGCATTCG
TACCTGACGACGCATAACCAGCCTTACCAATACGGGGATTATTCGATCTTTGTCGCAGAAATTGCGTCGACGACCAATGA
AAATCTCTTAACAAACTATTTCTTGGCGCACGAAACTGATCCGCAAATGCGGGCCTACGTCTTGAATTACTACCTAGATG
GGTTTAAGGGGACCGTGTTCCGTCAGACCCAGTTCGCGGAATTTGAACAGTGGTTACACGAACAGGATGCTGCCGGACAA
GCCTTGACTGCTGACCGGCTATCTAAGTATTATTTGCAACTCAATCAACGTTATTATGGTGATGCGGTTGTCAGTGATCC
GCAGATTGCGGACGAATGGTCACGGATTCCGCATTTCTATTACAATTACTACGTTTACCAGTATGCAACGGGATTTGCGG
CCGCATCGACGCTCGCCGAACGTATGACGACTAATCAGCCAGACGCGGTCAAGGATTACCTGGGCTACTTAAAGGCGGGG
TCATCAGCGTTTCCAATCGATGTGATGCACGCTGCTGGCGTTGATATGACGAAACCGACTTACTTGGATGACGCCTTCAA
GGTGTTTGAAGAACGGTTGGATGAGTTTGAACAGTTAGTGACGAAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(118-186)

Peptidase family M3 (Peptidase_M3)

(207-587)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0R2M6R5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

52.108

98.505

0.513

Multiple sequence alignment