Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ACI6O7_RS08995 Genome accession   NZ_OY725152
Coordinates   1834391..1836196 (-) Length   601 a.a.
NCBI ID   WP_404378285.1    Uniprot ID   -
Organism   Lactococcus lactis strain IMDO WA12L8     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1829391..1841196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI6O7_RS08980 (LLWA12L8_FAMOGCFE_01805) alaS 1829741..1832359 (-) 2619 WP_404378284.1 alanine--tRNA ligase -
  ACI6O7_RS08985 (LLWA12L8_FAMOGCFE_01806) - 1832625..1833551 (-) 927 WP_010906107.1 peptidyl-prolyl cis-trans isomerase -
  ACI6O7_RS08990 (LLWA12L8_FAMOGCFE_01807) - 1833705..1834388 (-) 684 WP_010906108.1 O-methyltransferase -
  ACI6O7_RS08995 (LLWA12L8_FAMOGCFE_01808) pepF 1834391..1836196 (-) 1806 WP_404378285.1 oligoendopeptidase F Regulator
  ACI6O7_RS09000 (LLWA12L8_FAMOGCFE_01809) coiA 1836259..1837248 (-) 990 WP_012898311.1 competence protein CoiA Machinery gene
  ACI6O7_RS09005 (LLWA12L8_FAMOGCFE_01810) - 1837322..1838407 (-) 1086 WP_012898312.1 YdcF family protein -
  ACI6O7_RS09010 (LLWA12L8_FAMOGCFE_01811) - 1838569..1839417 (-) 849 WP_010906111.1 alpha/beta hydrolase -
  ACI6O7_RS09015 (LLWA12L8_FAMOGCFE_01812) - 1839609..1841030 (-) 1422 WP_012898314.1 NCS2 family permease -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 69891.85 Da        Isoelectric Point: 5.0100

>NTDB_id=1160541 ACI6O7_RS08995 WP_404378285.1 1834391..1836196(-) (pepF) [Lactococcus lactis strain IMDO WA12L8]
MAKNRNEIPEKLTWDLTTIYKTDKEWEAELTRIKSELSLVEETDPGHLLDSAESLLIITEKMLSISQQVEKLYVYASMKN
DQDTREAKYQEYQSKATALYVKFGEVYAFYEPEFLKISKEVYNKWLGELKKLKNYDHMFERLFAKKAHILSQKEEKLLAA
AGEIFESPSETFEIFDNADIKLPMVKNESDEMIQLTHGNYSSLMESKNRGVRKAAYKALYSNYEQYQHTYAKTLQTNVKV
HNLNAQIRSYDSARQAALANNFVPEKVYDVLMEAIHQHLPLLHRYIELRKKILGITDLKMYDIYTPLSNLDYKFNYEDGV
KKAEEVLAIFGEEYKGKVKAAFEQRWIDVEENIGKRSGAYSGGSYDTNAFMLLNWQETLDDLFTLVHEMGHSMHSAFTRE
NQPYVYGDYPIFLAEIASTTNENILTETLLKESKDDKERFALLNHWLDSFRGTVFRQSQFAEFEQKIHEADAAGEVLTSE
YLNSLYGEINEKYYNLAAKENPEIQYEWARIPHFYYNFYVFQYATGFAAATFLAEKVVHGSDEDRQKYLEYLKAGSSAYP
LEVIAKAGVDMESTDYLDAAFELFKNRLSELEKLVEKGVHL

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=1160541 ACI6O7_RS08995 WP_404378285.1 1834391..1836196(-) (pepF) [Lactococcus lactis strain IMDO WA12L8]
ATGGCTAAGAACAGAAATGAAATTCCTGAAAAATTAACTTGGGATTTGACAACAATTTATAAAACAGATAAAGAATGGGA
AGCAGAGTTAACTAGAATAAAAAGTGAACTTTCACTCGTTGAAGAGACAGACCCCGGTCATTTACTTGATTCAGCTGAAA
GTCTTCTGATAATTACCGAAAAAATGTTATCCATTTCTCAACAAGTTGAAAAACTATATGTTTATGCTTCAATGAAAAAT
GACCAAGATACCAGAGAGGCTAAGTATCAGGAGTATCAGTCAAAAGCAACAGCCCTCTATGTGAAATTCGGAGAGGTCTA
TGCCTTCTATGAACCTGAGTTTTTGAAAATTTCAAAAGAAGTCTATAACAAATGGTTGGGGGAGCTTAAAAAATTAAAAA
ACTATGACCATATGTTTGAGCGCCTTTTTGCAAAAAAAGCTCATATTCTTAGTCAAAAAGAGGAAAAGTTATTGGCTGCG
GCTGGTGAAATTTTTGAAAGTCCTTCAGAAACTTTTGAAATTTTTGATAATGCGGATATTAAGTTACCTATGGTCAAAAA
TGAATCTGATGAGATGATCCAACTCACGCATGGAAATTACTCTTCCTTAATGGAAAGTAAGAATAGAGGAGTACGAAAAG
CAGCCTACAAAGCACTTTATAGTAATTATGAACAATATCAGCATACTTATGCAAAGACCTTACAGACTAATGTAAAAGTC
CATAATCTTAATGCCCAAATCCGCTCTTATGATTCAGCCCGTCAAGCTGCTCTGGCTAATAATTTTGTTCCAGAAAAAGT
TTACGATGTTTTGATGGAGGCCATTCATCAACATTTGCCACTTTTACATCGTTATATTGAACTACGCAAGAAAATTTTAG
GAATTACTGATTTAAAGATGTATGATATCTATACTCCATTATCTAATTTAGATTATAAATTTAACTATGAAGATGGAGTG
AAAAAAGCAGAAGAAGTTTTAGCGATATTTGGTGAAGAATATAAAGGAAAAGTTAAAGCAGCTTTTGAACAAAGATGGAT
TGATGTCGAAGAAAATATCGGAAAACGTTCGGGTGCTTATTCAGGTGGATCTTATGATACCAATGCTTTTATGCTTCTAA
ATTGGCAAGAAACGTTAGATGATCTTTTTACTTTAGTTCATGAAATGGGGCACTCAATGCATAGTGCTTTCACGCGTGAA
AACCAACCATATGTTTATGGGGATTATCCAATCTTTTTAGCTGAAATTGCCTCAACTACAAATGAAAATATTTTAACTGA
AACTTTATTAAAGGAAAGTAAAGATGATAAGGAGCGCTTCGCCCTTTTGAACCACTGGCTTGATAGTTTCCGTGGAACTG
TTTTCCGTCAGAGTCAATTTGCCGAATTTGAACAAAAAATTCATGAAGCAGATGCTGCCGGCGAAGTTTTAACAAGTGAA
TACTTAAACTCACTTTATGGCGAAATAAATGAAAAATACTATAATTTAGCAGCCAAAGAAAATCCAGAAATTCAGTATGA
ATGGGCTAGAATTCCGCATTTTTATTATAATTTCTATGTTTTTCAATACGCAACAGGTTTTGCTGCGGCAACTTTCTTAG
CTGAAAAAGTTGTTCATGGTTCAGATGAGGATCGTCAAAAATATCTTGAATATTTGAAGGCAGGTTCCTCAGCTTATCCT
TTAGAAGTAATTGCCAAAGCTGGAGTTGATATGGAATCTACCGATTATTTAGATGCCGCCTTTGAGCTTTTTAAAAATCG
ATTGAGTGAATTAGAAAAATTAGTTGAAAAAGGAGTTCATCTTTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(113-181)

Peptidase family M3 (Peptidase_M3)

(203-582)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

64.463

100

0.649

Multiple sequence alignment