Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   ACI6PC_RS11370 Genome accession   NZ_OY724206
Coordinates   2276452..2278218 (-) Length   588 a.a.
NCBI ID   WP_404410617.1    Uniprot ID   -
Organism   Companilactobacillus paralimentarius strain IMDO EBRM1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2271452..2283218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI6PC_RS11355 (CPEBRM1_ABPJDJAI_02293) - 2271713..2272444 (-) 732 WP_404410615.1 GntR family transcriptional regulator -
  ACI6PC_RS11360 (CPEBRM1_ABPJDJAI_02294) - 2272507..2274156 (-) 1650 WP_081784508.1 alpha,alpha-phosphotrehalase -
  ACI6PC_RS11365 (CPEBRM1_ABPJDJAI_02295) rcrQ 2274725..2276455 (-) 1731 WP_404410616.1 ABC transporter ATP-binding protein Regulator
  ACI6PC_RS11370 (CPEBRM1_ABPJDJAI_02296) rcrP 2276452..2278218 (-) 1767 WP_404410617.1 ABC transporter ATP-binding protein Regulator
  ACI6PC_RS11375 (CPEBRM1_ABPJDJAI_02297) - 2278264..2278728 (-) 465 WP_158136974.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACI6PC_RS11380 (CPEBRM1_ABPJDJAI_02298) - 2279427..2280110 (-) 684 WP_404410618.1 GTP pyrophosphokinase family protein -
  ACI6PC_RS11385 (CPEBRM1_ABPJDJAI_02299) - 2280184..2281620 (-) 1437 WP_056955812.1 MFS transporter -
  ACI6PC_RS11390 (CPEBRM1_ABPJDJAI_02300) - 2281691..2282221 (+) 531 WP_404410619.1 PadR family transcriptional regulator -

Sequence

Protein


Download         Length: 588 a.a.        Molecular weight: 65345.65 Da        Isoelectric Point: 9.2579

>NTDB_id=1160492 ACI6PC_RS11370 WP_404410617.1 2276452..2278218(-) (rcrP) [Companilactobacillus paralimentarius strain IMDO EBRM1]
MIKLFKKINKKEYSMIFISLIFIVLQVGLELEIPSYMSTITERLEKQGTTINQILQPGMMMILLSIFSVIASIIVGYLAA
HVAAGFTARLRSQIYNQVMDYSTQDIKKFSVSSLLTRSTNDLTQLQQFIAMGLQVIIKAPITAIWAITKIANKGWQWTTA
TAVAVIVLIVMLTFILGMVQPKFKMVQSLTDRLNLVTRENLSGIRVVHAYNAEDYQNDKFNQANKDLTDTNLFANRVLAL
MNPGMSFISSTLTLSVYAIGAIIINQATASATRLTLFSNMIVFSSYAMQVILGFLLLSIIFILLPRVTVSVSRINQVLDV
KPSVVSEKETTEDVEQTGTIEFKDVSFRYPHAEADAIHNLSFAAQQGQTIAIIGSTGSGKSTVMNLIPRLYDVTQGQVLV
DGVDVKNYAIEDLNNRLGYIPQKAVLFSGSIRSNLDFGQTDITAKKSDQQLNQALEIAQSRDFVDQKRDQLDSKVAQHGD
NFSGGQKQRLAVARAIARKPEILLFDDSFSALDYETDKKLRKALKEKAAKTTKVIIAQRISTIMDADQIIVLDNGNVAGQ
GTHHELLKNNQVYQEIAYSQLSKEELAE

Nucleotide


Download         Length: 1767 bp        

>NTDB_id=1160492 ACI6PC_RS11370 WP_404410617.1 2276452..2278218(-) (rcrP) [Companilactobacillus paralimentarius strain IMDO EBRM1]
ATGATAAAACTATTTAAAAAAATCAATAAAAAAGAATATTCAATGATTTTTATTAGTTTGATTTTTATCGTATTGCAAGT
TGGCTTGGAGCTGGAAATTCCTAGTTATATGTCGACTATTACGGAAAGACTGGAAAAGCAAGGAACGACGATCAATCAGA
TTTTACAGCCAGGAATGATGATGATTCTCTTATCAATTTTTAGTGTCATTGCTTCAATCATCGTCGGTTATTTGGCAGCT
CATGTGGCGGCAGGATTTACAGCTCGTTTGAGAAGCCAAATTTACAATCAGGTTATGGATTACTCGACACAAGATATTAA
GAAATTTTCTGTTTCTAGTTTGTTGACACGTTCGACAAACGATTTGACGCAACTACAACAATTTATTGCCATGGGCTTAC
AGGTTATTATTAAAGCTCCAATTACAGCCATTTGGGCGATCACGAAGATTGCTAATAAAGGTTGGCAATGGACGACTGCC
ACAGCCGTAGCCGTTATTGTTTTGATCGTGATGTTAACGTTCATTTTGGGTATGGTTCAACCTAAATTTAAAATGGTTCA
GAGTTTAACTGATCGTTTGAATTTAGTTACTAGAGAAAATTTATCAGGTATCAGAGTCGTTCATGCTTACAACGCCGAAG
ATTACCAAAATGATAAATTCAATCAAGCTAATAAAGACTTAACTGATACCAACTTGTTTGCTAACCGAGTATTGGCTTTG
ATGAATCCCGGAATGAGTTTCATTTCCAGTACCCTAACACTTTCAGTTTATGCGATCGGTGCCATCATAATTAATCAAGC
AACCGCTAGTGCCACAAGATTGACATTGTTCAGTAATATGATTGTTTTCTCATCATATGCCATGCAAGTTATCTTAGGAT
TCTTGTTACTATCAATTATTTTCATTCTTTTACCACGTGTGACAGTTTCAGTATCCAGAATCAATCAAGTCCTAGACGTA
AAACCATCCGTTGTTAGTGAAAAGGAAACAACTGAAGATGTTGAACAGACAGGAACCATAGAATTTAAAGATGTTAGTTT
TAGATATCCACATGCCGAAGCTGATGCGATTCACAATTTAAGCTTTGCGGCACAACAAGGACAAACAATTGCCATTATTG
GATCAACTGGTAGTGGTAAATCGACTGTTATGAATTTGATTCCTAGATTGTATGATGTTACTCAAGGACAAGTCTTGGTT
GATGGCGTAGATGTTAAAAATTATGCTATCGAAGATTTGAACAATCGTTTAGGGTATATTCCACAAAAAGCTGTTCTATT
TAGTGGTTCAATTCGTTCAAACCTTGATTTTGGACAAACCGATATTACTGCTAAAAAATCAGATCAACAGCTCAATCAAG
CTTTAGAGATTGCGCAATCACGTGATTTCGTCGATCAAAAACGAGATCAGCTTGATAGCAAGGTTGCACAACATGGTGAC
AACTTCTCCGGTGGTCAGAAACAACGTTTGGCTGTTGCTCGTGCTATTGCTAGAAAACCAGAAATTTTGCTTTTCGACGA
TTCCTTCTCGGCCTTAGATTATGAGACTGATAAGAAATTACGTAAGGCTTTAAAAGAAAAGGCTGCAAAAACAACAAAAG
TTATTATTGCTCAAAGAATCAGTACCATTATGGATGCCGACCAAATTATTGTGCTTGATAACGGAAACGTTGCTGGACAA
GGGACACATCATGAATTACTTAAGAATAATCAGGTTTATCAAGAGATTGCCTATTCACAATTGTCAAAGGAGGAATTAGC
TGAATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(358-508)

ABC transporter transmembrane region (ABC_membrane)

(16-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

55.276

100

0.561

Multiple sequence alignment