Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ACI6PC_RS11365 Genome accession   NZ_OY724206
Coordinates   2274725..2276455 (-) Length   576 a.a.
NCBI ID   WP_404410616.1    Uniprot ID   -
Organism   Companilactobacillus paralimentarius strain IMDO EBRM1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2269725..2281455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI6PC_RS11350 (CPEBRM1_ABPJDJAI_02292) - 2270940..2271662 (+) 723 WP_404278393.1 GntR family transcriptional regulator -
  ACI6PC_RS11355 (CPEBRM1_ABPJDJAI_02293) - 2271713..2272444 (-) 732 WP_404410615.1 GntR family transcriptional regulator -
  ACI6PC_RS11360 (CPEBRM1_ABPJDJAI_02294) - 2272507..2274156 (-) 1650 WP_081784508.1 alpha,alpha-phosphotrehalase -
  ACI6PC_RS11365 (CPEBRM1_ABPJDJAI_02295) rcrQ 2274725..2276455 (-) 1731 WP_404410616.1 ABC transporter ATP-binding protein Regulator
  ACI6PC_RS11370 (CPEBRM1_ABPJDJAI_02296) rcrP 2276452..2278218 (-) 1767 WP_404410617.1 ABC transporter ATP-binding protein Regulator
  ACI6PC_RS11375 (CPEBRM1_ABPJDJAI_02297) - 2278264..2278728 (-) 465 WP_158136974.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACI6PC_RS11380 (CPEBRM1_ABPJDJAI_02298) - 2279427..2280110 (-) 684 WP_404410618.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 63930.08 Da        Isoelectric Point: 9.1710

>NTDB_id=1160491 ACI6PC_RS11365 WP_404410616.1 2274725..2276455(-) (rcrQ) [Companilactobacillus paralimentarius strain IMDO EBRM1]
MKVIDGIKKYGSEYIKPLIIAIVFAMAGSIFRIVGPSQLSKITDLISKGLFGKIDLTKVMHIVIILTAIYVAAAVLSYGQ
GYIMATITQRFTQKLRTKITEKINNLPLQYFDTHNEGDTLSRVTNDLDTVGQSLNQSLGLLVSAVTLLLGSIVMMFTTNI
KLGTTAVLSVLVGFALTILLISKSQRYFYNQQNKLADVSGYLEEIYAGHDVVKTYNYTNQAKQEFTQLNDDLQTNVWKSQ
FLSGIMQPLMNFIGNFGYVMVSVVGAVLVLKGQISIGVIVAFMIYVRLFTQPLSQITQAFTSLQSAQAAMKRVFNFLGEA
EVEADADKQTLSGAKGNVKFDNVEFGYLPDQKIIKNFSMKAKAGQKVAIVGPTGSGKTTTVNLLMRFYDLNGGKITIDGV
DIKDMPRSNVRNQFDMVLQEAWIFEDTVRNNLVYNQKNISDEQIKAATKAVDLDHFIETLPNGYDTVLDDSVSLSVGQKQ
LLTIARALIRNAPMLILDEATSSVDTRTEEQIQKAMDVLMKGRTSFVIAHRLSTIKNADLILVVKDGEIIERGTHKELMA
QNGFYTNMYNSQFTKE

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=1160491 ACI6PC_RS11365 WP_404410616.1 2274725..2276455(-) (rcrQ) [Companilactobacillus paralimentarius strain IMDO EBRM1]
ATGAAAGTAATTGATGGAATTAAGAAATATGGTTCCGAATATATTAAGCCATTGATTATAGCAATTGTCTTTGCCATGGC
AGGTAGTATCTTCAGAATTGTGGGTCCTAGTCAATTAAGCAAGATCACTGATTTAATCAGTAAAGGTCTATTTGGAAAAA
TTGATTTAACAAAAGTTATGCATATTGTAATAATCTTGACCGCTATTTACGTAGCTGCTGCGGTCCTATCATATGGTCAA
GGTTATATTATGGCTACTATTACTCAACGTTTTACTCAAAAGTTAAGAACTAAAATAACTGAAAAGATTAATAATTTACC
GTTACAATACTTTGATACTCATAATGAAGGTGACACTTTAAGTCGAGTAACCAACGATTTGGATACTGTTGGTCAATCAT
TGAATCAAAGTTTAGGATTATTAGTTTCAGCTGTAACATTGCTTTTAGGTAGTATCGTTATGATGTTTACTACTAATATT
AAATTAGGAACAACTGCCGTTTTGTCAGTGTTAGTAGGATTTGCTTTGACAATACTGTTAATCTCAAAATCACAACGTTA
CTTTTACAATCAACAGAACAAATTAGCTGATGTTTCAGGCTATTTGGAAGAGATCTATGCTGGACATGATGTTGTAAAAA
CTTATAACTATACGAACCAAGCAAAGCAAGAATTCACACAATTGAATGATGATCTACAGACAAATGTTTGGAAATCACAA
TTTTTATCAGGAATAATGCAACCGTTGATGAATTTCATTGGTAACTTTGGTTACGTAATGGTCAGTGTTGTCGGCGCTGT
TTTAGTATTGAAAGGTCAAATCAGTATTGGTGTAATTGTAGCTTTTATGATCTATGTACGATTGTTTACGCAACCTCTAT
CACAGATTACACAGGCTTTTACCAGCTTGCAATCAGCTCAAGCAGCTATGAAACGAGTTTTTAATTTTCTCGGTGAAGCA
GAAGTTGAAGCAGATGCTGACAAGCAAACCTTATCTGGTGCGAAAGGAAATGTTAAATTTGATAATGTTGAATTCGGTTA
TCTGCCAGATCAGAAAATCATTAAGAATTTCTCGATGAAAGCAAAGGCAGGACAAAAAGTCGCCATTGTTGGTCCAACGG
GATCAGGTAAGACAACTACTGTTAACTTATTAATGCGTTTCTATGATTTGAATGGCGGAAAAATTACGATCGATGGTGTT
GATATTAAAGATATGCCACGTTCCAACGTTAGAAATCAGTTCGATATGGTTCTGCAGGAGGCCTGGATTTTCGAGGATAC
TGTTAGAAATAATTTAGTTTACAATCAAAAAAATATTTCAGATGAACAAATTAAAGCCGCAACCAAGGCTGTCGATTTGG
ATCATTTTATTGAAACACTACCAAACGGTTACGATACTGTTCTGGATGATTCAGTGAGCCTCTCAGTGGGACAAAAGCAA
TTATTGACAATTGCACGGGCTCTAATTAGAAACGCTCCTATGTTGATTTTGGATGAAGCAACTAGTTCAGTTGATACTAG
AACTGAAGAACAGATTCAAAAGGCAATGGATGTTTTGATGAAGGGCAGAACATCATTTGTCATTGCGCATCGACTTTCAA
CTATTAAGAATGCTGATTTGATCTTAGTAGTTAAAGATGGAGAGATTATTGAACGAGGAACTCATAAAGAGTTGATGGCA
CAGAATGGTTTCTACACAAATATGTACAATAGTCAATTTACTAAAGAGTAG

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(18-293)

ABC transporter (ABC_tran)

(355-502)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

61.47

96.875

0.595

Multiple sequence alignment