Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ACI6O5_RS05230 Genome accession   NZ_OY724202
Coordinates   998464..1000263 (-) Length   599 a.a.
NCBI ID   WP_404281712.1    Uniprot ID   -
Organism   Fructilactobacillus sanfranciscensis strain IMDO 150101     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 993464..1005263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI6O5_RS05200 (FS150101_NMOIFPPK_01035) trmL 994064..994588 (-) 525 WP_404281701.1 tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL -
  ACI6O5_RS05205 (FS150101_NMOIFPPK_01036) - 994719..995300 (+) 582 WP_404281703.1 copper homeostasis protein CutC -
  ACI6O5_RS05210 (FS150101_NMOIFPPK_01037) - 995331..996218 (-) 888 WP_404281705.1 RluA family pseudouridine synthase -
  ACI6O5_RS05215 (FS150101_NMOIFPPK_01038) - 996211..997020 (-) 810 WP_404281707.1 NAD kinase -
  ACI6O5_RS05220 (FS150101_NMOIFPPK_01039) - 996995..997642 (-) 648 WP_404281709.1 GTP pyrophosphokinase family protein -
  ACI6O5_RS05225 (FS150101_NMOIFPPK_01040) - 997806..998375 (+) 570 WP_404281711.1 DsbA family protein -
  ACI6O5_RS05230 (FS150101_NMOIFPPK_01041) pepF 998464..1000263 (-) 1800 WP_404281712.1 oligoendopeptidase F Regulator
  ACI6O5_RS05235 (FS150101_NMOIFPPK_01042) - 1000253..1001320 (-) 1068 WP_404281714.1 competence protein CoiA -
  ACI6O5_RS05240 (FS150101_NMOIFPPK_01043) - 1001369..1002064 (-) 696 WP_404281716.1 adaptor protein MecA -
  ACI6O5_RS05245 (FS150101_NMOIFPPK_01044) - 1002076..1002819 (-) 744 WP_056957560.1 MBL fold metallo-hydrolase -
  ACI6O5_RS05250 (FS150101_NMOIFPPK_01045) - 1002907..1003407 (+) 501 WP_404281718.1 hypothetical protein -

Sequence

Protein


Download         Length: 599 a.a.        Molecular weight: 68672.10 Da        Isoelectric Point: 4.9465

>NTDB_id=1160467 ACI6O5_RS05230 WP_404281712.1 998464..1000263(-) (pepF) [Fructilactobacillus sanfranciscensis strain IMDO 150101]
MTVKSIPNRDQVPENLTWDLTPIFSDNQAFLAELDSVKEATKTINQLSGIMSNSADDLLNVVKKVLNLNRRYENVYVYSH
LSNDVDTSNNDAQARMEQVESLGTKLSEATAWFDPEIINLGKTKIDNFISKQPKLSEYDRLFKMILKDEGHVLSVEAEKL
LSGASNIFNAPEKIFSMMDSADFIFPEVKDDQGNLVRLSNGLYSLLLQSTNQNTRKEAFQKFYTVFNQFKHTLAATLSSE
VAVNNYQAQAHHFNSAREQAMHENEIPESVFDTLVKTVNDNLPLLHRYVSLRKKILNLSEMHMYDMYVPLAKDPDVKYTF
AESKKIMLQALQIMGPDYVKHVQEELDNRWIDVVENKGKRTGAYSSGVYDTNPYILLNWQDNLDNLYTLIHETGHSMHSF
YSSHNQPYQYGNYSIFVAEIASTTNENILTDYLLANTNDSEMKKYILSQYLEGFKGTIFRQTQFAEFENWIHEQGRLGKS
LTADVMSKKYKEINEKYYGDEIVSDPEIAIEWSRIPHFYYDFYVYQYATGFGAASTLAEKISSGNQNSIDAYLNYLKSGS
SDTPINIMKRAGVDMTNSQYLEAAFAKFSQRMDELESLI

Nucleotide


Download         Length: 1800 bp        

>NTDB_id=1160467 ACI6O5_RS05230 WP_404281712.1 998464..1000263(-) (pepF) [Fructilactobacillus sanfranciscensis strain IMDO 150101]
ATGACAGTTAAAAGTATCCCCAATCGTGATCAGGTTCCTGAAAACTTAACCTGGGATTTAACCCCTATTTTTTCAGATAA
TCAAGCATTCCTTGCTGAGTTAGATTCTGTTAAAGAAGCGACTAAAACAATTAATCAATTATCTGGTATTATGAGCAATA
GTGCAGATGATTTATTAAATGTAGTTAAAAAAGTTTTGAATTTAAATCGTCGTTACGAAAACGTATATGTATATTCACAT
CTTAGCAATGACGTGGATACTTCCAATAACGATGCTCAGGCTAGAATGGAACAAGTTGAATCCCTAGGAACAAAATTAAG
TGAAGCAACAGCTTGGTTTGATCCGGAAATTATTAATCTTGGCAAAACCAAAATAGATAATTTCATTTCCAAGCAACCTA
AATTAAGCGAATATGATCGTCTATTTAAGATGATTTTGAAAGATGAAGGTCATGTTCTAAGTGTTGAAGCTGAAAAATTA
TTGTCAGGTGCTTCTAATATTTTTAACGCGCCTGAAAAAATATTCAGTATGATGGATAGTGCTGATTTTATTTTTCCAGA
AGTAAAAGATGATCAAGGAAACTTAGTACGCTTATCAAACGGATTATATAGTCTCTTACTTCAATCAACCAACCAAAATA
CCAGAAAAGAAGCCTTTCAAAAGTTCTATACAGTGTTTAATCAGTTTAAACATACTTTAGCAGCAACTTTATCATCTGAA
GTTGCAGTAAATAATTATCAAGCCCAAGCACATCACTTTAATAGTGCACGGGAACAAGCTATGCATGAAAATGAAATTCC
AGAAAGCGTTTTTGATACTTTAGTTAAAACGGTAAATGACAATTTACCTTTATTGCATCGATATGTATCTTTGCGTAAAA
AGATTCTAAATTTATCTGAAATGCATATGTATGATATGTATGTGCCTCTCGCAAAAGACCCAGATGTTAAATATACGTTT
GCTGAATCAAAAAAGATTATGTTACAAGCACTTCAAATTATGGGACCAGACTATGTAAAACATGTTCAAGAAGAACTAGA
CAATCGCTGGATTGATGTAGTTGAAAATAAAGGCAAACGGACTGGTGCATATTCATCTGGAGTTTATGATACCAATCCAT
ACATTTTGTTGAACTGGCAAGATAATCTTGATAATTTATATACTTTAATTCATGAAACTGGACATAGTATGCACAGTTTT
TATTCTAGTCATAATCAACCATATCAATATGGAAATTATTCAATTTTTGTTGCTGAAATTGCCTCGACAACTAACGAAAA
TATTCTTACCGACTATTTATTAGCTAACACGAATGATTCAGAAATGAAGAAATACATTCTTAGTCAATATTTAGAAGGTT
TCAAGGGAACTATTTTCCGTCAAACACAATTTGCTGAATTTGAGAATTGGATTCACGAACAGGGAAGATTAGGAAAATCA
TTAACTGCGGATGTAATGAGTAAAAAGTACAAAGAAATTAATGAAAAATATTATGGTGATGAGATTGTTTCGGATCCAGA
AATTGCAATTGAATGGTCAAGAATTCCACATTTCTATTATGATTTTTATGTATATCAGTACGCAACTGGGTTTGGTGCAG
CTTCAACTTTAGCTGAAAAAATCAGTTCTGGTAATCAGAATTCAATTGATGCTTACTTAAATTATTTAAAATCTGGGAGT
TCAGATACACCAATTAATATTATGAAGCGTGCAGGGGTAGATATGACTAATAGTCAATATTTAGAAGCTGCATTTGCCAA
ATTTTCACAACGCATGGATGAATTAGAAAGCTTAATTTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(206-586)

Oligopeptidase F (Peptidase_M3_N)

(116-185)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50

98.831

0.494

Multiple sequence alignment