Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACI6O5_RS02200 Genome accession   NZ_OY724202
Coordinates   420619..422001 (+) Length   460 a.a.
NCBI ID   WP_404282369.1    Uniprot ID   -
Organism   Fructilactobacillus sanfranciscensis strain IMDO 150101     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 415619..427001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI6O5_RS02175 (FS150101_NMOIFPPK_00430) - 415917..416588 (+) 672 WP_056958139.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase -
  ACI6O5_RS02180 (FS150101_NMOIFPPK_00431) - 416686..417738 (+) 1053 WP_404282366.1 WxL protein host-binding domain-containing protein -
  ACI6O5_RS02185 (FS150101_NMOIFPPK_00432) - 417847..419181 (-) 1335 WP_014081752.1 C1 family peptidase -
  ACI6O5_RS02190 (FS150101_NMOIFPPK_00433) rpiA 419236..419922 (-) 687 WP_056958134.1 ribose-5-phosphate isomerase RpiA -
  ACI6O5_RS02195 (FS150101_NMOIFPPK_00434) - 420070..420606 (+) 537 WP_056958132.1 dUTP diphosphatase -
  ACI6O5_RS02200 (FS150101_NMOIFPPK_00435) radA 420619..422001 (+) 1383 WP_404282369.1 DNA repair protein RadA Machinery gene
  ACI6O5_RS02205 (FS150101_NMOIFPPK_00436) gltX 422075..423565 (+) 1491 WP_056958128.1 glutamate--tRNA ligase -
  ACI6O5_RS02210 (FS150101_NMOIFPPK_00437) cysS 423672..425090 (+) 1419 WP_404282370.1 cysteine--tRNA ligase -
  ACI6O5_RS02215 (FS150101_NMOIFPPK_00438) - 425090..425515 (+) 426 WP_056958124.1 Mini-ribonuclease 3 -
  ACI6O5_RS02220 (FS150101_NMOIFPPK_00439) rlmB 425505..426257 (+) 753 WP_103423232.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ACI6O5_RS02225 (FS150101_NMOIFPPK_00440) - 426260..426799 (+) 540 WP_238981625.1 NYN domain-containing protein -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 50059.42 Da        Isoelectric Point: 6.5927

>NTDB_id=1160455 ACI6O5_RS02200 WP_404282369.1 420619..422001(+) (radA) [Fructilactobacillus sanfranciscensis strain IMDO 150101]
MAKASTRFVCSNCGYVSPTYLGRCPNCGEWNTFEEETVTKNDTKTANVTRVSFEGKKSRPTLIDDVDAHDAPRYKIESNE
LNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSGQLSHYGKRVLYVTGEESADQVKMRSDRLGVKHLDNLYVFPETDMTV
IREAIANVKPDVVIIDSVQTMQEGDVASAVGSVSQVRGVTADLMNIAKTNNITIFVVGHVTKGGAIAGPKTLEHMVDTVL
YFEGDKHHAYRLLRAVKNRFGSTNELGIFEMVDTGLKEVANPSEIFLEERLHNATGSAIVVAMEGTRPILVEIQALITPS
VFGNAQRTATGVDRNRVSLIMAVLEKRAGLMLQNQDAYLKAAGGVKLVEPAIDLAMAISIASSYEDISTDPKECYIGELG
LTGEIRRVDRIEQRIREATKLGFSRVIVPKHNLDGLKMDFDIDVVGVTTIREALKVALKK

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=1160455 ACI6O5_RS02200 WP_404282369.1 420619..422001(+) (radA) [Fructilactobacillus sanfranciscensis strain IMDO 150101]
ATGGCAAAGGCATCGACACGATTTGTTTGTTCTAATTGTGGTTATGTTTCACCTACTTATTTGGGACGTTGTCCTAACTG
TGGTGAGTGGAATACGTTTGAAGAAGAAACGGTTACCAAAAACGATACGAAAACAGCCAATGTAACCAGAGTTTCATTTG
AAGGGAAGAAATCAAGACCAACTTTAATTGATGATGTTGACGCTCACGATGCACCCCGTTATAAAATCGAATCGAACGAA
TTAAATCGTGTATTGGGTGGTGGAGTAGTTCCAGGGTCTTTAGTTTTAATTGGTGGTGACCCAGGAATTGGAAAGTCAAC
GTTGTTATTACAAGTTTCTGGACAATTAAGTCATTATGGTAAACGAGTTTTGTACGTTACTGGAGAAGAAAGTGCGGATC
AAGTTAAGATGCGTTCGGATCGACTTGGTGTTAAGCATCTTGATAATTTATATGTTTTCCCAGAAACTGATATGACGGTT
ATTCGGGAAGCAATTGCAAATGTCAAACCAGATGTTGTCATTATTGATTCAGTGCAAACGATGCAAGAAGGCGACGTGGC
ATCAGCAGTTGGTTCTGTTTCACAAGTCCGTGGCGTGACTGCTGATTTAATGAACATTGCGAAGACTAACAATATTACCA
TTTTTGTCGTGGGACATGTGACTAAAGGTGGAGCGATTGCTGGACCAAAGACTTTAGAGCATATGGTTGATACCGTTTTG
TATTTTGAAGGTGACAAGCATCATGCTTATCGTTTGTTGCGAGCCGTTAAAAATCGATTTGGTTCAACTAATGAATTAGG
AATTTTTGAAATGGTTGATACAGGACTAAAAGAAGTTGCTAATCCATCTGAAATCTTTTTAGAAGAACGGTTGCATAACG
CTACCGGTTCCGCGATTGTAGTTGCGATGGAAGGGACTCGTCCCATTTTAGTTGAAATCCAAGCTTTAATCACGCCCTCA
GTCTTTGGGAATGCCCAACGAACTGCGACAGGAGTTGACCGAAATCGGGTTTCTTTGATTATGGCCGTTTTGGAAAAACG
AGCAGGCTTGATGTTACAAAACCAGGATGCATATTTAAAAGCTGCTGGAGGCGTTAAGCTAGTTGAACCTGCAATTGATT
TAGCAATGGCAATCAGTATTGCTTCTAGTTATGAAGACATTAGTACTGATCCAAAAGAATGTTATATTGGTGAATTAGGT
TTGACTGGTGAAATTCGTCGGGTTGATCGAATTGAGCAACGAATTCGTGAAGCTACTAAATTAGGTTTTTCCCGTGTGAT
TGTGCCCAAACATAATTTAGATGGATTAAAAATGGATTTTGATATTGATGTGGTTGGAGTTACTACCATCCGCGAAGCTT
TGAAAGTTGCTTTAAAGAAATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(370-432)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(77-224)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

65.132

99.13

0.646
  radA Streptococcus pneumoniae D39

64.693

99.13

0.641
  radA Streptococcus pneumoniae R6

64.693

99.13

0.641
  radA Streptococcus pneumoniae Rx1

64.693

99.13

0.641
  radA Streptococcus mitis NCTC 12261

64.693

99.13

0.641
  radA Streptococcus pneumoniae TIGR4

64.693

99.13

0.641
  radA Bacillus subtilis subsp. subtilis str. 168

61.135

99.565

0.609

Multiple sequence alignment