Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   ACI6PA_RS03100 Genome accession   NZ_OY724190
Coordinates   651136..651405 (+) Length   89 a.a.
NCBI ID   WP_147000141.1    Uniprot ID   -
Organism   Companilactobacillus crustorum strain IMDO BLLM15     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 646136..656405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI6PA_RS03075 (CCBLLM15_CCBLLM15_00622) - 646268..647353 (+) 1086 WP_057866996.1 glycosyltransferase family 4 protein -
  ACI6PA_RS03080 (CCBLLM15_CCBLLM15_00623) - 647496..648260 (+) 765 WP_057866935.1 helix-turn-helix domain-containing protein -
  ACI6PA_RS03085 (CCBLLM15_CCBLLM15_00624) - 648914..649552 (-) 639 WP_057866936.1 YigZ family protein -
  ACI6PA_RS03090 (CCBLLM15_CCBLLM15_00625) - 649582..650133 (+) 552 WP_057866937.1 DEAD/DEAH box helicase family protein -
  ACI6PA_RS03095 (CCBLLM15_CCBLLM15_00626) - 650234..650728 (+) 495 WP_261766173.1 helicase-related protein -
  ACI6PA_RS03100 comFC 651136..651405 (+) 270 WP_147000141.1 ComF family protein Machinery gene
  ACI6PA_RS03105 (CCBLLM15_CCBLLM15_00628) hpf 651502..652050 (+) 549 WP_057866940.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  ACI6PA_RS03110 (CCBLLM15_CCBLLM15_00629) secA 652259..654619 (+) 2361 WP_057866941.1 preprotein translocase subunit SecA -
  ACI6PA_RS03115 (CCBLLM15_CCBLLM15_00630) prfB 654661..655774 (+) 1114 WP_186809286.1 peptide chain release factor 2 -

Sequence

Protein


Download         Length: 89 a.a.        Molecular weight: 10523.36 Da        Isoelectric Point: 10.0027

>NTDB_id=1160431 ACI6PA_RS03100 WP_147000141.1 651136..651405(+) (comFC) [Companilactobacillus crustorum strain IMDO BLLM15]
MYELYADIFDLKLLLKKNDADKPQAQKNRSERLKTPQTFLPLPELMKIQKNQRILILDDIYTTGRTLMHAYDIFLRAGFK
NICTFSLSR

Nucleotide


Download         Length: 270 bp        

>NTDB_id=1160431 ACI6PA_RS03100 WP_147000141.1 651136..651405(+) (comFC) [Companilactobacillus crustorum strain IMDO BLLM15]
GTGTATGAACTTTATGCTGATATCTTTGATTTAAAATTACTTTTAAAGAAAAATGATGCTGATAAGCCACAAGCACAGAA
GAATCGAAGCGAGCGTTTGAAGACGCCACAGACTTTTTTGCCATTGCCAGAATTGATGAAGATTCAAAAAAATCAAAGAA
TTTTAATCTTGGATGACATTTATACAACTGGTCGAACTTTGATGCATGCTTATGATATATTTTTGAGAGCTGGATTTAAA
AATATTTGTACATTTTCACTCTCAAGATAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(32-82)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Latilactobacillus sakei subsp. sakei 23K

48.864

98.876

0.483
  comFC Lactococcus lactis subsp. cremoris KW2

44.737

85.393

0.382

Multiple sequence alignment