Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACI6PH_RS10095 Genome accession   NZ_OY724134
Coordinates   2041502..2042875 (-) Length   457 a.a.
NCBI ID   WP_309511215.1    Uniprot ID   -
Organism   Companilactobacillus paralimentarius strain R19081     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2036502..2047875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI6PH_RS10075 (CPR19081_DFPECDIO_02019) - 2036825..2037238 (-) 414 WP_054642513.1 Mini-ribonuclease 3 -
  ACI6PH_RS10080 (CPR19081_DFPECDIO_02020) cysS 2037231..2038634 (-) 1404 WP_404327377.1 cysteine--tRNA ligase -
  ACI6PH_RS10085 (CPR19081_DFPECDIO_02021) gltX 2038728..2040224 (-) 1497 WP_025085253.1 glutamate--tRNA ligase -
  ACI6PH_RS10090 (CPR19081_DFPECDIO_02022) - 2040205..2041488 (-) 1284 WP_404327378.1 PIN/TRAM domain-containing protein -
  ACI6PH_RS10095 (CPR19081_DFPECDIO_02023) radA 2041502..2042875 (-) 1374 WP_309511215.1 DNA repair protein RadA Machinery gene
  ACI6PH_RS10100 (CPR19081_DFPECDIO_02024) - 2042895..2043437 (-) 543 WP_025085256.1 dUTP diphosphatase -
  ACI6PH_RS10105 (CPR19081_DFPECDIO_02025) - 2043568..2043870 (+) 303 WP_025085257.1 GNAT family N-acetyltransferase -
  ACI6PH_RS10110 (CPR19081_DFPECDIO_02026) rpiA 2043870..2044559 (+) 690 WP_404278159.1 ribose-5-phosphate isomerase RpiA -
  ACI6PH_RS10115 (CPR19081_DFPECDIO_02027) - 2044576..2045919 (+) 1344 WP_025085259.1 aminopeptidase C -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49971.28 Da        Isoelectric Point: 6.8359

>NTDB_id=1160340 ACI6PH_RS10095 WP_309511215.1 2041502..2042875(-) (radA) [Companilactobacillus paralimentarius strain R19081]
MAKAKTKFVCQNCGYVSPRYLGRCPNCGAWNQMVEEVDHPESVKAKATPSRRVSDLESKPVSIDNVSFEKEPRVKTDLSE
LNRVLGGGIVPGSLILIGGDPGIGKSTLLTQVSGQLANTGGKVLYVSGEESASQIKMRADRLGISGKDLYLYPQTDMSYI
RQTINEMHPDYLIIDSVQTMDEPEITSAVGSISQIREVTAELMNIAKQDNITVFVVGHVTKGGAIAGPKILEHMVDTVLY
FEGDTHHSYRILRSVKNRFGSTNEIGIFEMRTKGLVEVSNPSEIFLEERLADANGSAVVVSMEGTRPILVEIQSLITPTI
FGNAKRTATGLDHNRVSVIMAVLEKRGNLMLQNQDAYLKSTGGVKLDEPAIDLALAMSIASSYKNMGIPGTDCFVGEVGL
TGEIRRVNRIDQRVNEAEKLGFKRIFIPKNNMGDWSKDNKIQIVGVSTVTDAMNKIF

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=1160340 ACI6PH_RS10095 WP_309511215.1 2041502..2042875(-) (radA) [Companilactobacillus paralimentarius strain R19081]
TTGGCAAAAGCTAAAACAAAATTCGTATGTCAAAATTGTGGCTACGTCTCACCTAGATATTTAGGACGTTGTCCTAACTG
TGGTGCTTGGAATCAGATGGTTGAGGAAGTAGATCATCCTGAATCTGTTAAAGCTAAAGCAACTCCTAGCCGTCGGGTTA
GTGATTTAGAGTCCAAACCAGTTAGTATCGATAATGTTTCCTTTGAAAAGGAACCTCGTGTTAAGACAGATTTATCTGAA
TTGAATCGAGTTCTCGGGGGCGGTATCGTGCCCGGTTCTTTGATTTTGATTGGTGGTGATCCCGGTATTGGTAAGTCAAC
TTTGTTAACACAAGTTTCAGGACAACTAGCGAATACTGGTGGTAAAGTGTTATATGTTTCTGGTGAAGAGAGTGCTTCAC
AGATCAAGATGCGAGCTGATCGTTTGGGTATTTCGGGTAAAGATCTATATCTGTACCCTCAGACAGATATGAGTTATATC
CGTCAAACAATCAACGAAATGCATCCGGATTACTTAATCATTGATTCTGTGCAAACAATGGATGAACCAGAAATTACTTC
TGCCGTGGGGAGTATTTCTCAAATCAGAGAAGTTACAGCTGAATTGATGAATATTGCTAAGCAGGACAACATTACTGTTT
TCGTCGTTGGACATGTAACTAAAGGTGGCGCCATTGCTGGTCCAAAAATATTGGAACACATGGTGGATACTGTTCTATAC
TTTGAAGGGGACACACACCATAGTTATCGAATCTTACGTTCTGTTAAGAACCGTTTTGGTTCAACGAATGAAATTGGTAT
TTTTGAAATGCGGACTAAGGGTCTGGTGGAAGTATCTAATCCATCAGAAATTTTCTTAGAGGAACGTTTAGCGGATGCCA
ATGGTTCAGCGGTAGTAGTTTCAATGGAAGGAACTCGACCAATTTTGGTTGAAATCCAATCTTTGATCACTCCTACAATT
TTTGGTAATGCCAAAAGAACCGCCACGGGATTGGATCATAACCGAGTATCAGTGATTATGGCCGTTCTAGAAAAACGTGG
TAATTTGATGCTCCAAAATCAGGATGCTTATTTGAAATCAACTGGTGGCGTTAAATTAGATGAACCAGCAATTGATCTTG
CTTTAGCGATGTCAATTGCCTCCAGTTATAAAAATATGGGTATCCCAGGAACTGATTGTTTTGTAGGTGAAGTTGGATTG
ACCGGTGAAATTCGTCGTGTTAATCGAATTGATCAACGAGTAAATGAAGCAGAAAAATTAGGTTTCAAGCGTATTTTTAT
TCCCAAGAATAATATGGGAGATTGGTCTAAAGATAATAAGATTCAAATTGTTGGTGTCAGTACCGTAACTGATGCGATGA
ACAAAATATTTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(367-431)

AAA domain (AAA_25)

(74-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae R6

63.457

100

0.635
  radA Streptococcus pneumoniae Rx1

63.457

100

0.635
  radA Streptococcus pneumoniae D39

63.457

100

0.635
  radA Streptococcus mitis SK321

63.457

100

0.635
  radA Streptococcus pneumoniae TIGR4

63.457

100

0.635
  radA Streptococcus mitis NCTC 12261

63.457

100

0.635
  radA Bacillus subtilis subsp. subtilis str. 168

62.914

99.125

0.624

Multiple sequence alignment