Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   Q7F15_RS19660 Genome accession   NZ_OY569118
Coordinates   3944280..3945647 (-) Length   455 a.a.
NCBI ID   WP_304414820.1    Uniprot ID   A0AA48MAX8
Organism   Brevibacillus aydinogluensis strain 4475 isolate 4475     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3939280..3950647
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7F15_RS19635 (BSPP4475_19765) ispD 3939703..3940395 (-) 693 WP_171567141.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  Q7F15_RS19640 (BSPP4475_19770) - 3940417..3941508 (-) 1092 WP_171567140.1 PIN/TRAM domain-containing protein -
  Q7F15_RS19645 (BSPP4475_19775) - 3941799..3942194 (+) 396 WP_171567139.1 DUF1573 domain-containing protein -
  Q7F15_RS19650 (BSPP4475_19780) pssA 3942354..3943082 (-) 729 WP_171567138.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  Q7F15_RS19655 (BSPP4475_19785) disA 3943194..3944270 (-) 1077 WP_171567137.1 DNA integrity scanning diadenylate cyclase DisA -
  Q7F15_RS19660 (BSPP4475_19790) radA 3944280..3945647 (-) 1368 WP_304414820.1 DNA repair protein RadA Machinery gene
  Q7F15_RS19665 (BSPP4475_19795) - 3945748..3948198 (-) 2451 WP_171567135.1 ATP-dependent Clp protease ATP-binding subunit -
  Q7F15_RS19670 (BSPP4475_19800) - 3948278..3949339 (-) 1062 WP_171567134.1 protein arginine kinase -
  Q7F15_RS19675 (BSPP4475_19805) - 3949361..3949876 (-) 516 WP_171567133.1 UvrB/UvrC motif-containing protein -
  Q7F15_RS19680 (BSPP4475_19810) - 3949922..3950386 (-) 465 WP_230077635.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49609.28 Da        Isoelectric Point: 7.1011

>NTDB_id=1160289 Q7F15_RS19660 WP_304414820.1 3944280..3945647(-) (radA) [Brevibacillus aydinogluensis strain 4475 isolate 4475]
MSKYKTKYACQECGYESPKWMGKCPGCNKWNTMVEEVAVKSSHRYELTVGRQRTEAMPLTQVASEEEPRMDTRLGELNRV
LGGGLVPGSLILVGGDPGIGKSTLLLQTSFALAHQGLKVLYVSGEESAKQIKLRADRLGMNTPPMYVLAENDLELIEQHI
NHIDPHVLIIDSIQTVFHPAVQSAAGSVAQVREATAQLMRIAKGKGIATFIVGHVTKEGSIAGPRMLEHMVDAVLYFEGE
RHNTFRILRAVKNRFGSTNEIGIFEMKDRGLAEVSNPSEIFLAERPIGVAGSTVVASMEGTRPVLVELQALVAPTSFVTP
RRMATGVDHQRVAMIMAVLEKRMGLMLQNQDAYVNVAGGVRLDEPAVDLAIAVSIASSFRDQPTNPHDVVIGEVGLTGEV
RGVSRIEQRVREAHKLGFKRVIIPEKNIRGLEVPTGIDVIGISNIADALDEVLRG

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=1160289 Q7F15_RS19660 WP_304414820.1 3944280..3945647(-) (radA) [Brevibacillus aydinogluensis strain 4475 isolate 4475]
ATGTCAAAGTATAAAACGAAATACGCGTGTCAAGAATGTGGCTATGAATCGCCCAAATGGATGGGCAAATGTCCGGGTTG
CAACAAGTGGAACACGATGGTCGAAGAAGTGGCGGTCAAATCGTCTCACCGGTACGAGCTGACGGTTGGCAGGCAGCGTA
CGGAAGCCATGCCGCTGACGCAGGTGGCGAGCGAGGAAGAACCGCGGATGGATACGAGGCTCGGCGAATTGAACCGCGTA
TTGGGCGGCGGACTTGTTCCCGGGTCGCTGATTCTTGTCGGCGGGGATCCCGGGATTGGCAAATCAACCCTGCTGCTGCA
GACGTCGTTTGCGCTCGCCCATCAGGGGTTAAAAGTACTGTACGTCTCCGGCGAGGAGTCGGCGAAGCAGATCAAGCTGC
GGGCCGACCGCCTCGGGATGAATACTCCGCCCATGTACGTGTTGGCGGAAAACGACTTGGAACTGATCGAACAGCATATT
AATCATATAGATCCGCATGTGTTAATTATTGACTCGATACAAACCGTGTTTCACCCCGCCGTTCAGTCTGCGGCGGGCAG
CGTGGCGCAGGTGCGGGAGGCGACTGCCCAGCTGATGCGCATTGCCAAGGGCAAGGGCATCGCCACCTTCATCGTCGGCC
ACGTGACCAAGGAAGGTTCCATCGCCGGCCCCCGCATGCTGGAGCACATGGTGGATGCCGTGCTTTACTTTGAAGGGGAG
CGGCACAACACCTTCCGCATCTTGCGGGCGGTGAAAAACCGCTTTGGCTCCACCAATGAGATCGGGATTTTTGAGATGAA
AGATCGTGGCTTGGCAGAAGTGAGCAATCCGTCGGAAATCTTTCTCGCGGAACGGCCCATCGGCGTCGCTGGTTCCACGG
TGGTGGCCAGCATGGAAGGGACGCGGCCGGTGCTGGTGGAACTGCAGGCGCTGGTGGCCCCCACCAGCTTTGTAACACCC
CGCCGGATGGCGACCGGGGTGGATCATCAGCGCGTGGCCATGATCATGGCTGTGCTGGAAAAGCGCATGGGACTGATGCT
GCAAAACCAGGATGCGTACGTCAACGTGGCTGGCGGCGTGCGGCTGGATGAGCCGGCCGTCGATTTGGCGATTGCCGTCA
GCATCGCCAGCAGCTTCCGCGATCAGCCGACCAATCCACATGACGTCGTCATCGGTGAAGTGGGGCTGACGGGCGAAGTG
CGCGGCGTTTCCCGGATCGAACAGCGGGTCAGGGAAGCCCACAAGCTGGGGTTCAAGCGGGTGATCATTCCGGAAAAGAA
CATCCGCGGCTTGGAAGTCCCGACCGGCATAGACGTAATCGGCATCAGCAACATAGCCGATGCTTTGGACGAGGTGCTAA
GGGGGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(70-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(338-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

67.031

100

0.675
  radA Streptococcus pneumoniae Rx1

58.499

99.56

0.582
  radA Streptococcus pneumoniae D39

58.499

99.56

0.582
  radA Streptococcus pneumoniae R6

58.499

99.56

0.582
  radA Streptococcus pneumoniae TIGR4

58.499

99.56

0.582
  radA Streptococcus mitis NCTC 12261

58.499

99.56

0.582
  radA Streptococcus mitis SK321

58.499

99.56

0.582

Multiple sequence alignment